dhimmel/pathways v2.0: Compiling human pathway gene sets

This release compiles 1,862 pathway gene sets (1,341 from Reactome, 298 from WikiPathways, and 223 from the PID). Reactome and the PID were retrieved via Pathway Commons v7. Compared to the previous release (dhimmel/pathways v1.1), this release removes MSigDB pathways due to licensing issues.

A compilation of pathway gene sets: dhimmel/pathways v1.1

This release contains minor updates to our compilation of human pathway gene sets. MSigDB was updated from 5.0 to 5.1 which had no effect. WikiPathways was updated which added versioning to pathway IDs. Entrez Genes are now sorted as integers in data/pathways.tsv. This release contains 1624 pathways.

Initial release

Gene sets are retrieved from WikiPathways and MSigDB v5.0 and combined into a single tsv.