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Added BSC-DB electrodes for 2202 2201
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@dipterix
dipterix committed Aug 2, 2024
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Package: threeBrain
Type: Package
Title: Your Advanced 3D Brain Visualization
Version: 1.1.1.9003
Version: 1.1.1.9004
Authors@R: c(
person("Zhengjia", "Wang", email = "dipterix.wang@gmail.com", role = c("aut", "cre", "cph")),
person("John", "Magnotti", email = "John.Magnotti@Pennmedicine.upenn.edu", role = c("ctb", "res")),
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1 change: 1 addition & 0 deletions inst/prototypes/DBS-BSC-DB-2201.json
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{"type":"DBS-BSC-DB-2201","name":[],"description":"Boston Scientific DB-2201 (8 contacts)\n Contact length : 1.5 mm\n Central spacing : 2 mm\n Tip size : 1.5 mm(*)\n Diameter : 1.3 mm","geometry":"CustomGeometry","n":[197,390],"fix_outline":false,"transform":[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1],"position":[0,0,0,0.2487,0,0.0495,0.2154,0.1244,0.0495,0.1244,0.2154,0.0495,1.5231e-17,0.2487,0.0495,-0.1244,0.2154,0.0495,-0.2154,0.1244,0.0495,-0.2487,3.0462e-17,0.0495,-0.2154,-0.1244,0.0495,-0.1244,-0.2154,0.0495,-4.5694e-17,-0.2487,0.0495,0.1244,-0.2154,0.0495,0.2154,-0.1244,0.0495,0.2487,0,0.0495,0.4596,0,0.1904,0.398,0.2298,0.1904,0.2298,0.398,0.1904,2.8144e-17,0.4596,0.1904,-0.2298,0.398,0.1904,-0.398,0.2298,0.1904,-0.4596,5.6287e-17,0.1904,-0.398,-0.2298,0.1904,-0.2298,-0.398,0.1904,-8.4431e-17,-0.4596,0.1904,0.2298,-0.398,0.1904,0.398,-0.2298,0.1904,0.4596,0,0.1904,0.6005,0,0.4013,0.5201,0.3003,0.4013,0.3003,0.5201,0.4013,3.6771e-17,0.6005,0.4013,-0.3003,0.5201,0.4013,-0.5201,0.3003,0.4013,-0.6005,7.3543e-17,0.4013,-0.5201,-0.3003,0.4013,-0.3003,-0.5201,0.4013,-1.1031e-16,-0.6005,0.4013,0.3003,-0.5201,0.4013,0.5201,-0.3003,0.4013,0.6005,0.0001,0.4013,0.65,0,0.65,0.5629,0.325,0.65,0.325,0.5629,0.65,3.9801e-17,0.65,0.65,-0.325,0.5629,0.65,-0.5629,0.325,0.65,-0.65,7.9602e-17,0.65,-0.5629,-0.325,0.65,-0.325,-0.5629,0.65,-1.194e-16,-0.65,0.65,0.325,-0.5629,0.65,0.5629,-0.325,0.65,0.6499,0.0001,0.65,0.65,0,2.25,0.5629,0.325,2.25,0.325,0.5629,2.25,3.9801e-17,0.65,2.25,-0.325,0.5629,2.25,-0.5629,0.325,2.25,-0.65,7.9602e-17,2.25,-0.5629,-0.325,2.25,-0.325,-0.5629,2.25,-1.194e-16,-0.65,2.25,0.325,-0.5629,2.25,0.5629,-0.325,2.25,0.6499,0.0001,2.25,0.65,0,4.25,0.5629,0.325,4.25,0.325,0.5629,4.25,3.9801e-17,0.65,4.25,-0.325,0.5629,4.25,-0.5629,0.325,4.25,-0.65,7.9602e-17,4.25,-0.5629,-0.325,4.25,-0.325,-0.5629,4.25,-1.194e-16,-0.65,4.25,0.325,-0.5629,4.25,0.5629,-0.325,4.25,0.6499,0.0001,4.25,0.65,0,6.25,0.5629,0.325,6.25,0.325,0.5629,6.25,3.9801e-17,0.65,6.25,-0.325,0.5629,6.25,-0.5629,0.325,6.25,-0.65,7.9602e-17,6.25,-0.5629,-0.325,6.25,-0.325,-0.5629,6.25,-1.194e-16,-0.65,6.25,0.325,-0.5629,6.25,0.5629,-0.325,6.25,0.6499,0.0001,6.25,0.65,0,8.25,0.5629,0.325,8.25,0.325,0.5629,8.25,3.9801e-17,0.65,8.25,-0.325,0.5629,8.25,-0.5629,0.325,8.25,-0.65,7.9602e-17,8.25,-0.5629,-0.325,8.25,-0.325,-0.5629,8.25,-1.194e-16,-0.65,8.25,0.325,-0.5629,8.25,0.5629,-0.325,8.25,0.6499,0.0001,8.25,0.65,0,10.25,0.5629,0.325,10.25,0.325,0.5629,10.25,3.9801e-17,0.65,10.25,-0.325,0.5629,10.25,-0.5629,0.325,10.25,-0.65,7.9602e-17,10.25,-0.5629,-0.325,10.25,-0.325,-0.5629,10.25,-1.194e-16,-0.65,10.25,0.325,-0.5629,10.25,0.5629,-0.325,10.25,0.6499,0.0001,10.25,0.65,0,12.25,0.5629,0.325,12.25,0.325,0.5629,12.25,3.9801e-17,0.65,12.25,-0.325,0.5629,12.25,-0.5629,0.325,12.25,-0.65,7.9602e-17,12.25,-0.5629,-0.325,12.25,-0.325,-0.5629,12.25,-1.194e-16,-0.65,12.25,0.325,-0.5629,12.25,0.5629,-0.325,12.25,0.6499,0.0001,12.25,0.65,0,14.25,0.5629,0.325,14.25,0.325,0.5629,14.25,3.9801e-17,0.65,14.25,-0.325,0.5629,14.25,-0.5629,0.325,14.25,-0.65,7.9602e-17,14.25,-0.5629,-0.325,14.25,-0.325,-0.5629,14.25,-1.194e-16,-0.65,14.25,0.325,-0.5629,14.25,0.5629,-0.325,14.25,0.6499,0.0001,14.25,0.65,0,16.25,0.5629,0.325,16.25,0.325,0.5629,16.25,3.9801e-17,0.65,16.25,-0.325,0.5629,16.25,-0.5629,0.325,16.25,-0.65,7.9602e-17,16.25,-0.5629,-0.325,16.25,-0.325,-0.5629,16.25,-1.194e-16,-0.65,16.25,0.325,-0.5629,16.25,0.5629,-0.325,16.25,0.6499,0.0001,16.25,0.65,0,17,0.5629,0.325,17,0.325,0.5629,17,3.9801e-17,0.65,17,-0.325,0.5629,17,-0.5629,0.325,17,-0.65,7.9602e-17,17,-0.5629,-0.325,17,-0.325,-0.5629,17,-1.194e-16,-0.65,17,0.325,-0.5629,17,0.5629,-0.325,17,0.6499,0.0001,17,0.65,0,17.01,0.5629,0.325,17.01,0.325,0.5629,17.01,3.9801e-17,0.65,17.01,-0.325,0.5629,17.01,-0.5629,0.325,17.01,-0.65,7.9602e-17,17.01,-0.5629,-0.325,17.01,-0.325,-0.5629,17.01,-1.194e-16,-0.65,17.01,0.325,-0.5629,17.01,0.5629,-0.325,17.01,0.6499,0.0001,17.01,0.65,0,18,0.5629,0.325,18,0.325,0.5629,18,3.9801e-17,0.65,18,-0.325,0.5629,18,-0.5629,0.325,18,-0.65,7.9602e-17,18,-0.5629,-0.325,18,-0.325,-0.5629,18,-1.194e-16,-0.65,18,0.325,-0.5629,18,0.5629,-0.325,18,0.6499,0.0001,18,0,0,18],"index":[1,0,2,2,0,3,3,0,4,4,0,5,5,0,6,6,0,7,7,0,8,8,0,9,9,0,10,10,0,11,11,0,12,12,0,13,13,0,1,1,2,14,2,15,14,2,3,15,3,16,15,3,4,16,4,17,16,4,5,17,5,18,17,5,6,18,6,19,18,6,7,19,7,20,19,7,8,20,8,21,20,8,9,21,9,22,21,9,10,22,10,23,22,10,11,23,11,24,23,11,12,24,12,25,24,12,13,25,13,26,25,13,1,26,1,14,26,14,15,27,15,28,27,15,16,28,16,29,28,16,17,29,17,30,29,17,18,30,18,31,30,18,19,31,19,32,31,19,20,32,20,33,32,20,21,33,21,34,33,21,22,34,22,35,34,22,23,35,23,36,35,23,24,36,24,37,36,24,25,37,25,38,37,25,26,38,26,39,38,26,14,39,14,27,39,27,28,40,28,41,40,28,29,41,29,42,41,29,30,42,30,43,42,30,31,43,31,44,43,31,32,44,32,45,44,32,33,45,33,46,45,33,34,46,34,47,46,34,35,47,35,48,47,35,36,48,36,49,48,36,37,49,37,50,49,37,38,50,38,51,50,38,39,51,39,52,51,39,27,52,27,40,52,40,41,53,41,54,53,41,42,54,42,55,54,42,43,55,43,56,55,43,44,56,44,57,56,44,45,57,45,58,57,45,46,58,46,59,58,46,47,59,47,60,59,47,48,60,48,61,60,48,49,61,49,62,61,49,50,62,50,63,62,50,51,63,51,64,63,51,52,64,52,65,64,52,40,65,40,53,65,53,54,66,54,67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0 inst/prototypes/BSC-DB-2202.json → inst/prototypes/DBS-BSC-DB-2202.json
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File renamed without changes.
31 changes: 31 additions & 0 deletions inst/prototypes/sEEG.R
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Original file line number Diff line number Diff line change
Expand Up @@ -247,3 +247,34 @@ for( n_contacts in c(15, 18) ) {
overwrite = TRUE
)
}

# ---- BostonScientific DBS-BSC-DB-2201 electrode ------------
probe_head <- 1.5 # Not sure about this one
width <- 1.5
contact_spacing <- 2
overall_length <- 400
diameter <- 1.3
n_contacts <- 8

contacts <- probe_head + width / 2 + 0:(n_contacts-1) * contact_spacing
overall_length <- ceiling(max(contacts) + width / 2 + 0.05)

proto <- seeg_prototype(
type = "DBS-BSC-DB-2201",
description = c(
"Boston Scientific DB-2201 (8 contacts)",
"Contact length : 1.5 mm",
"Central spacing : 2 mm",
"Tip size : 1.5 mm(*)",
"Diameter : 1.3 mm"
),
center_position = contacts,
contact_widths = width,
diameter = diameter,
overall_length = overall_length,
default_interpolation = sprintf("%.1fx%d", contact_spacing, n_contacts - 1L),
overwrite = TRUE
)

proto$model_rigid <- TRUE
proto$save_as_default(force = TRUE)

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