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Relocatable, directory organization, cwltool sync #2
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Small improvements from testing with a non-Docker install: - Makes the script relocatable and still find necessary resource files so we can build a conda package. - Writes the created apps and workflows into a single directory (dx-cwl-prep) both locally and on the platform to improve cleanup and organization. - Avoid use of sudo for cleaning up directories - Handle previously prepared paths, either full locations on DNAnexus or lookups for `file-*` references. - Updates cwl-runner to match arguments in common-workflow-language/cwltool#542
geetduggal
approved these changes
Oct 7, 2017
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Small improvements from testing with a non-Docker install:
so we can build a conda package.
directory (dx-cwl-prep) both locally and on the platform to improve cleanup
and organization.
or lookups for
file-*references.Support for user space docker common-workflow-language/cwltool#542