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refactor: upgrade FOCA & major app rewrite #248

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merged 33 commits into from
Jan 11, 2024

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kushagra189
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Excess boilerplate code was removed and replaced by FOCA's latest version.
Fixes #153

cwl_wes/config.yaml Outdated Show resolved Hide resolved
@kushagra189
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This is currently blocked by #250 . #250 will be implemented separately and merged in this branch before releasing the refactored code.

@uniqueg uniqueg requested review from uniqueg and removed request for uniqueg December 29, 2022 20:56
@lvarin
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lvarin commented Dec 22, 2023

Can we merge this? Current default branch does not pass the tests, the image used in the docker file does not have any repository available.

@kushagra189 kushagra189 self-assigned this Dec 24, 2023
@uniqueg uniqueg changed the title Maintenance/migrate foca version refactor: upgrade FOCA & major rewrite of app Jan 11, 2024
@uniqueg uniqueg changed the title refactor: upgrade FOCA & major rewrite of app refactor: upgrade FOCA & major rewrite Jan 11, 2024
@uniqueg uniqueg changed the title refactor: upgrade FOCA & major rewrite refactor: upgrade FOCA & major app rewrite Jan 11, 2024
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Excellent work!

Of course, there's the cwl-tes import issue that should prevent the app from processing any workflows. But given that the HEAD commit is anyway broken and this PR is already gigantic, I think we can merge this now.

There are probably a bunch of other small issues as well, but overall it looks very good, I think. Again, time to merge and then figure out issues later on and get the app back working 🚀

@uniqueg uniqueg merged commit b4958f8 into dev Jan 11, 2024
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@uniqueg uniqueg deleted the maintenance/migrate_foca_version branch January 11, 2024 22:15
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Migrate boilerplate to FOCA v0.10.0
3 participants