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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 625 365

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 295 74

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 285 72

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 251 146

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 140 88

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 110 19

Repositories

Showing 10 of 175 repositories
  • cppdlr Public

    Discrete Lehmann representation of imaginary time Green's functions

    flatironinstitute/cppdlr’s past year of commit activity
    C++ 8 Apache-2.0 4 1 0 Updated Sep 19, 2024
  • sciware Public

    Learning materials for scientific software development

    flatironinstitute/sciware’s past year of commit activity
    HTML 76 34 2 0 Updated Sep 19, 2024
  • ManifoldEM Public

    Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data

    flatironinstitute/ManifoldEM’s past year of commit activity
    Python 4 GPL-3.0 0 3 0 Updated Sep 19, 2024
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 76 MIT 7 82 4 Updated Sep 19, 2024
  • MutantAutoMate Public
    flatironinstitute/MutantAutoMate’s past year of commit activity
    Python 0 0 4 2 Updated Sep 19, 2024
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    flatironinstitute/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 4,896 0 0 Updated Sep 19, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 42 Apache-2.0 6 50 1 Updated Sep 19, 2024
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 625 GPL-2.0 365 65 (1 issue needs help) 9 Updated Sep 19, 2024
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 5 MIT 0 16 1 Updated Sep 19, 2024
  • aLENS_analysis Public

    Postprocessing & analysis scripts for aLENS data

    flatironinstitute/aLENS_analysis’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Sep 18, 2024
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