In some cases, barista loses group information after refresh (group dropdown / selection not available after login)

[BarbaraCzub]

When I was making GO-CAM models, which I refer to in this annotation ticket geneontology/go-annotation#2047, I was not able to select the ARUK-UCL attribution (or any other attribution). The drop-down menu with this option seems to have disappeared. So now all of the models appear to be assigned by GO_Noctua (instead of ARUK-UCL).

cc @RLovering

Here are the model details:

Test for AE and output comparison - case 1 gomodel:5b528b1100000699	http://orcid.org/0000-0002-3898-1727	development	2018-08-07					Edit Form GPAD OWL
Test for AE and output comparison - case 2 gomodel:5b528b1100000729	http://orcid.org/0000-0002-3898-1727	development	2018-08-07					Edit Form GPAD OWL
Test for AE and output comparison - case 3 gomodel:5b528b1100000667	http://orcid.org/0000-0002-3898-1727	development	2018-08-07

[kltm]

Wow, that's weird. I can duplicate.
I'm looking into this now.

[kltm]

Refreshing has no effect (not that it should).
noctua-dev.berkeleybop.org still works as expected.
Will check server logs.

[kltm]

Possibly a supervisord restart attempt tried to bring up another barista, clobbering or making the running one unhappy?

events.js:183
      throw er; // Unhandled 'error' event
      ^

Error: listen EADDRINUSE :::9090
    at Object._errnoException (util.js:992:11)
    at _exceptionWithHostPort (util.js:1014:20)
    at Server.setupListenHandle [as _listen2] (net.js:1355:14)
    at listenInCluster (net.js:1396:12)
    at Server.listen (net.js:1480:7)
    at VantageServer.vantageServer.init (/home/swdev/local/src/git/noctua/node_modules/vantage/lib/server.js:130:17)
    at Vantage.listen (/home/swdev/local/src/git/noctua/node_modules/vantage/lib/index.js:160:17)
    at new BaristaLauncher (/home/swdev/local/src/git/noctua/barista.js:1311:10)
    at Object.<anonymous> (/home/swdev/local/src/git/noctua/barista.js:2656:15)
    at Module._compile (module.js:652:30)
[13:30:39] 'run-barista' errored after 865 ms
[13:30:39] Error: Command `node barista.js --debug 0 --users ~/local/src/git/go-site/metadata/users.yaml --groups ~/local/src/git/go-site/metadata/groups.yaml --self http://toaster.lbl.gov:3400 --secrets ~/local/src/git/go-internal/barista/ --context go --repl 9090` failed with exit code 1
    at ChildProcess.exithandler (child_process.js:275:12)
    at emitTwo (events.js:126:13)
    at ChildProcess.emit (events.js:214:7)
    at maybeClose (internal/child_process.js:925:16)
    at Process.ChildProcess._handle.onexit (internal/child_process.js:209:5)

[kltm]

Interesting that it was the local vantage server reporting there.

[kltm]

@BarbaraCzub I seem to have it working again. That was a little odd.
You may have to logout and login again. All of your work should be saved and fine.

[kltm]

Note that barista was reset, removing all current sessions and resetting temporary position information.

[BarbaraCzub]

Thank you for fixing this @kltm . The group selection option is back now. However, would it be possible to change my default 'assigned by' field to 'ARUK-UCL'? ( cc @RLovering )

[pgaudet]

I think it has to do with the order in which your groups are listed in the users.yaml file. I dont know if something else needs to happen; can you please test again ?

Thanks, Pascale

[BarbaraCzub]

Hi Pascale, 'BHF-UCL' is still displayed as my default 'assigned by' option.

[BarbaraCzub]

So, while I'm working on a model, even if I select 'ARUK-UCL' to start with, if I need to refresh the page, it always reverts back to 'BHF-UCL'.

[pgaudet]

Did you try logging out and log back in ?

[BarbaraCzub]

I have now. 'BHF-UCL' is still the default option.

[BarbaraCzub]

Maybe it could be removed completely from next to my name in the users.yaml file?
(I do not expect I'll need to use it).

[pgaudet]

Sure - but still the order should be taken into account. I'd like to know what the issue is; perhaps this is not immediate.

[BarbaraCzub]

No, it's not immediate.

[kltm]

@pgaudet Note: #456
As well, yes--there is always an extra manual step to make sure that problems do not leak into the system.

[kltm]

I'll put in to do the services restart later today.

[BarbaraCzub]

Thanks @kltm I'll check tomorrow whether my default group has been updated. (Unless 'services restart' is referring to something else?).

[BarbaraCzub]

Thanks @kltm. My default group has now been updated.