✨Add damped_oscillation_associated_spectra missing variable #888
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name: "Tests" | |
on: | |
push: | |
tags: | |
- v** | |
branches-ignore: | |
- "dependabot/**" | |
- "sourcery/**" | |
- "pre-commit-ci-update-config" | |
pull_request: | |
jobs: | |
pre-commit: | |
name: Pre-commit | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Run pre-commit | |
uses: pre-commit/action@v3.0.1 | |
docs: | |
name: Build Docs | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v4 | |
- name: Setup conda | |
uses: s-weigand/setup-conda@v1 | |
with: | |
conda-channels: conda-forge | |
activate-conda: false | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
conda install -y pandoc | |
python -m pip install -U pip wheel | |
python -m pip install ".[docs]" | |
- name: Show installed dependencies | |
run: pip freeze | |
- name: Build docs | |
run: make --directory=docs clean html | |
docs-link: | |
name: Check Doc Links | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v4 | |
- name: Setup conda | |
uses: s-weigand/setup-conda@v1 | |
with: | |
conda-channels: conda-forge | |
activate-conda: false | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
conda install -y pandoc | |
python -m pip install -U pip wheel | |
python -m pip install ".[docs]" | |
- name: Show installed dependencies | |
run: pip freeze | |
- name: Build docs | |
run: make --directory=docs clean linkcheck | |
test: | |
name: Test pyglotaran stable | |
runs-on: ${{ matrix.os }} | |
needs: [pre-commit, docs] | |
strategy: | |
matrix: | |
os: [ubuntu-latest, windows-latest, macOS-latest] | |
python-version: ["3.10", "3.11"] | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install -U pip wheel | |
python -m pip install -r requirements_pinned.txt | |
python -m pip install -U -e ".[test]" | |
- name: Run tests | |
run: python -m pytest --nbval --cov=./ --cov-report term --cov-report xml --cov-config pyproject.toml tests | |
- name: Codecov Upload | |
continue-on-error: true | |
uses: codecov/codecov-action@v4 | |
with: | |
file: ./coverage.xml | |
name: ${{ matrix.os }}-py${{ matrix.python-version }} | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
test-pyglotaran-dev: | |
name: Test pyglotaran dev | |
runs-on: ubuntu-latest | |
needs: [pre-commit, docs] | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v4 | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: | | |
python -m pip install -U pip wheel | |
python -m pip install -r requirements_pinned.txt | |
python -m pip install -U -e ".[test]" | |
python -m pip install git+https://github.com/glotaran/pyglotaran | |
- name: Show installed dependencies | |
run: pip freeze | |
- name: Run tests | |
run: python -m pytest --nbval --cov=./ --cov-report term --cov-report xml --cov-config pyproject.toml tests | |
deploy: | |
name: Deploy to PyPi | |
runs-on: ubuntu-latest | |
if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
needs: test | |
permissions: | |
id-token: write # IMPORTANT: this permission is mandatory for trusted publishing | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- name: Install dependencies | |
run: python -m pip install -U hatch | |
- name: Build dist | |
run: hatch build | |
- name: Publish package | |
uses: pypa/gh-action-pypi-publish@v1.8.14 | |
with: | |
print-hash: true |