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  1. BEAST-FLOW BEAST-FLOW Public

    Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.

    Nextflow 2 1

  2. DiVirusity DiVirusity Public

    Quantify viral genetic diversity within hosts from NGS data (paired-end raw reads) without needing to reconstruct full-length haplotypes.

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  3. covflo covflo Public

    Forked from BCCDC-PHL/covflo

    Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.

    Python 1

  4. fluflo fluflo Public

    Forked from BCCDC-PHL/fluflo

    Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.

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  5. SNPGenie SNPGenie Public

    Forked from chasewnelson/SNPGenie

    Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

    Perl

  6. SNPerr SNPerr Public

    Determine read depth and variant frequency thresholds to distinguish NGS sequencing errors from true SNPs. Simulates effect of changing per-site read depth and variant frequency on accuracy of gene…

    Python