Fixes to Orbit #973
Workflow file for this run
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| name: Windows build | |
| on: | |
| push: | |
| paths: | |
| - '**' | |
| - '!*' | |
| - '*.py' | |
| - '!doc/**' | |
| - '!.github/**' | |
| - '.github/workflows/build_windows.yml' | |
| pull_request: | |
| paths-ignore: | |
| - 'doc/**' | |
| schedule: | |
| - cron: '0 20 * * 2' | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| if: "!contains(github.event.head_commit.message, 'ci skip')" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_actionAngle.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_sphericaldf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_conversion.py tests/test_galpypaper.py tests/test_import.py tests/test_interp_potential.py tests/test_kuzminkutuzov.py tests/test_util.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_SpiralArmsPotential.py tests/test_potential.py tests/test_scf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_quantity.py tests/test_coords.py | |
| REQUIRES_PYNBODY: false | |
| # needs to be separate for different config | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_orbit.py -k test_energy_jacobi_conservation | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_orbit.py tests/test_orbits.py -k 'not test_energy_jacobi_conservation' | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_evolveddiskdf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_jeans.py tests/test_dynamfric.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_qdf.py tests/test_pv2qdf.py tests/test_streamgapdf_impulse.py tests/test_noninertial.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_streamgapdf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_diskdf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.11" | |
| TEST_FILES: tests/test_streamdf.py tests/test_streamspraydf.py | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: false | |
| REQUIRES_ASTROQUERY: false | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.10" | |
| TEST_FILES: tests/test_orbit.py -k test_energy_jacobi_conservation | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: "3.10" | |
| TEST_FILES: tests/test_orbit.py tests/test_orbits.py -k 'not test_energy_jacobi_conservation' | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: 3.9 | |
| TEST_FILES: tests/test_orbit.py -k test_energy_jacobi_conservation | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| - os: windows-latest | |
| python-version: 3.9 | |
| TEST_FILES: tests/test_orbit.py tests/test_orbits.py -k 'not test_energy_jacobi_conservation' | |
| REQUIRES_PYNBODY: false | |
| REQUIRES_ASTROPY: true | |
| REQUIRES_ASTROQUERY: true | |
| REQUIRES_NUMBA: false | |
| REQUIRES_JAX: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Cache both conda and pip, conda done by setup-micromamba | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~\AppData\Local\pip\Cache | |
| key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('.github/workflows/build_windows.yml') }}-${{ matrix.REQUIRES_PYNBODY }}-${{ matrix.REQUIRES_ASTROPY }}-${{ matrix.REQUIRES_ASTROQUERY }}-${{ matrix.REQUIRES_NUMBA }}-${{ matrix.REQUIRES_JAX }} | |
| # Install just the GSL using conda | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: gsl | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| create-args: gsl | |
| cache-environment: true | |
| cache-environment-key: ${{ runner.os }}-${{ hashFiles('.github/workflows/build_windows.yml') }} | |
| - name: Set GSL environment variables | |
| shell: bash -l {0} | |
| run: | | |
| echo "INCLUDE=$CONDA_PREFIX\\Library\\include" >> $GITHUB_ENV | |
| echo "LIB=$CONDA_PREFIX\\Library\\lib" >> $GITHUB_ENV | |
| echo "LIBPATH=$CONDA_PREFIX\\Library\\lib" >> $GITHUB_ENV | |
| echo "$CONDA_PREFIX\\Library\\bin" >> $GITHUB_PATH # necessary when we don't activate the environment | |
| - name: Install Python dependencies | |
| run: | | |
| pip install --upgrade --upgrade-strategy eager numpy scipy matplotlib numexpr setuptools cython pytest tqdm | |
| - name: Install pynbody | |
| if: ${{ matrix.REQUIRES_PYNBODY }} | |
| run: | | |
| pip install --upgrade --upgrade-strategy eager h5py pandas pytz | |
| pip install --upgrade --upgrade-strategy eager wheel | |
| pip install --upgrade --upgrade-strategy eager pynbody | |
| - name: Install astropy | |
| if: ${{ matrix.REQUIRES_ASTROPY && matrix.python-version != 4.0 }} | |
| run: | | |
| pip install astropy pyerfa | |
| - name: Install astropy (Python 4.0; doesn't exist of course, placeholder for new python v) | |
| if: ${{ matrix.REQUIRES_ASTROPY && matrix.python-version == 4.0 }} | |
| run: | | |
| pip install pyerfa | |
| pip install --extra-index-url=https://pkgs.dev.azure.com/astropy-project/astropy/_packaging/nightly/pypi/simple/ --pre astropy | |
| - name: Install astroquery | |
| if: ${{ matrix.REQUIRES_ASTROQUERY }} | |
| run: pip install astroquery | |
| - name: Install numba | |
| if: ${{ matrix.REQUIRES_NUMBA }} | |
| run: pip install numba | |
| - name: Install JAX | |
| if: ${{ matrix.REQUIRES_JAX }} | |
| run: pip install jax jaxlib | |
| - name: Install package | |
| run: | | |
| python -m pip install -ve . | |
| - name: Print debug info | |
| shell: pwsh | |
| env: | |
| REQUIRES_ASTROPY : ${{ matrix.REQUIRES_ASTROPY }} | |
| REQUIRES_ASTROQUERY : ${{ matrix.REQUIRES_ASTROQUERY }} | |
| REQUIRES_PYNBODY : ${{ matrix.REQUIRES_PYNBODY }} | |
| run: | | |
| python -c "import numpy; print('numpy: {}'.format(numpy.__version__))" | |
| python -c "import scipy; print('scipy: {}'.format(scipy.__version__))" | |
| python -c "import matplotlib; print('matplotlib: {}'.format(matplotlib.__version__))" | |
| if ( $REQUIRES_ASTROPY ) { python -c "import astropy; print('astropy: {}'.format(astropy.__version__))"} | |
| if ( $REQUIRES_ASTROQUERY ) { python -c "import astroquery; print('astroquery: {}'.format(astroquery.__version__))"} | |
| if ( $REQUIRES_PYNBODY ) {python -c "import pynbody; print('pynbody: {}'.format(pynbody.__version__))"} | |
| - name: Test with pytest | |
| shell: bash | |
| env: | |
| TEST_FILES: ${{ matrix.TEST_FILES }} | |
| REQUIRES_ASTROPY : ${{ matrix.REQUIRES_ASTROPY }} | |
| run: | | |
| pip install pytest-cov | |
| # Turn astropy deprecation warnings into errors as well if astropy | |
| if $REQUIRES_ASTROPY; then export PYTEST_ADDOPTS="-W error::astropy.utils.exceptions.AstropyDeprecationWarning"; else export PYTEST_ADDOPTS=""; fi | |
| export XDRLIB_DEPRECATION="-W ignore:\"'xdrlib' is deprecated and slated for removal in Python 3.13\":DeprecationWarning" | |
| # eval necessary for -k 'not ...' in TEST_FILES | |
| eval "pytest -W error::DeprecationWarning -W error::FutureWarning $PYTEST_ADDOPTS $XDRLIB_DEPRECATION -v $TEST_FILES --cov galpy --cov-config .coveragerc --disable-pytest-warnings --durations=0" |