test #63
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| name: test | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: "51 3 * * 6" # Runs at 03:51, only on Saturday | |
| jobs: | |
| build: | |
| name: ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu", "macos", "windows"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - uses: crystal-lang/install-crystal@v1 | |
| with: | |
| crystal: latest | |
| - name: Install dependencies | |
| run: shards install --without-development --release | |
| - name: Run specs | |
| run: crystal spec | |
| - name: Build executable | |
| run: shards build --release -Dpreview_mt | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: sdust-${{ matrix.os }} | |
| path: bin/${{ matrix.os == 'windows' && 'sdust.exe' || 'sdust' }} | |
| - name: Download chrM | |
| run: curl -L https://hgdownload.cse.ucsc.edu/goldenpath/hg38/chromosomes/chrM.fa.gz -o chrM.fa.gz | |
| - name: Install original sdust and compare results | |
| run: | | |
| curl -L https://github.com/lh3/sdust/archive/refs/tags/v0.1.tar.gz -o v0.1.tar.gz | |
| tar -xzf v0.1.tar.gz | |
| cd sdust-0.1 | |
| make | |
| cd .. | |
| ./sdust-0.1/sdust -t 19 -w 63 chrM.fa.gz > original_sdust.out | |
| ./bin/sdust -t 19 -w 63 -@ 2 chrM.fa.gz > crystal_sdust.out | |
| diff original_sdust.out crystal_sdust.out |