Fix identifier conflicts (checked by cwltool for the first time) by g…

…iving ids to embedded tools and workflows.
manu-chroma · Mar 27, 2017 · fcc593a · fcc593a
1 parent d038d86
commit fcc593a
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diff --git a/v1.0/v1.0/count-lines10-wf.cwl b/v1.0/v1.0/count-lines10-wf.cwl
@@ -13,6 +13,7 @@ steps:
     out: [count_output]
     run:
       class: Workflow
+      id: subwf
       inputs:
         file1: File
       outputs:

diff --git a/v1.0/v1.0/count-lines2-wf.cwl b/v1.0/v1.0/count-lines2-wf.cwl
@@ -39,6 +39,7 @@ steps:
     out: [parseInt_output]
     run:
       class: ExpressionTool
+      id: subtool
       inputs:
         parseInt_file1:
           type: File

diff --git a/v1.0/v1.0/scatter-valuefrom-wf1.cwl b/v1.0/v1.0/scatter-valuefrom-wf1.cwl
@@ -35,6 +35,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         first:
           type: string

diff --git a/v1.0/v1.0/scatter-valuefrom-wf5.cwl b/v1.0/v1.0/scatter-valuefrom-wf5.cwl
@@ -35,6 +35,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         first:
           type: string

diff --git a/v1.0/v1.0/scatter-wf1.cwl b/v1.0/v1.0/scatter-wf1.cwl
@@ -19,6 +19,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         echo_in:
           type: string

diff --git a/v1.1.0-dev1/v1.1.0-dev1/count-lines10-wf.cwl b/v1.1.0-dev1/v1.1.0-dev1/count-lines10-wf.cwl
@@ -13,6 +13,7 @@ steps:
     out: [count_output]
     run:
       class: Workflow
+      id: subwf
       inputs:
         file1: File
       outputs:

diff --git a/v1.1.0-dev1/v1.1.0-dev1/count-lines2-wf.cwl b/v1.1.0-dev1/v1.1.0-dev1/count-lines2-wf.cwl
@@ -39,6 +39,7 @@ steps:
     out: [parseInt_output]
     run:
       class: ExpressionTool
+      id: subtool
       inputs:
         parseInt_file1:
           type: File

diff --git a/v1.1.0-dev1/v1.1.0-dev1/scatter-valuefrom-wf1.cwl b/v1.1.0-dev1/v1.1.0-dev1/scatter-valuefrom-wf1.cwl
@@ -35,6 +35,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         first:
           type: string

diff --git a/v1.1.0-dev1/v1.1.0-dev1/scatter-valuefrom-wf5.cwl b/v1.1.0-dev1/v1.1.0-dev1/scatter-valuefrom-wf5.cwl
@@ -35,6 +35,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         first:
           type: string

diff --git a/v1.1.0-dev1/v1.1.0-dev1/scatter-wf1.cwl b/v1.1.0-dev1/v1.1.0-dev1/scatter-wf1.cwl
@@ -19,6 +19,7 @@ steps:
     scatter: echo_in
     run:
       class: CommandLineTool
+      id: subtool
       inputs:
         echo_in:
           type: string