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Adding SSSOM profile for literals #235

Merged
merged 8 commits into from
Aug 2, 2023
Merged

Adding SSSOM profile for literals #235

merged 8 commits into from
Aug 2, 2023

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matentzn
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@matentzn matentzn commented Nov 9, 2022

Fixes #197
Fixes #234

  • docs/ have been added/updated if necessary
  • make test has been run locally
  • tests have been added/updated (if applicable)
  • CHANGELOG.md has been updated.

This PR adds a new profile to SSSOM for the representation of literal mappings, leaving the default SSSOM intact.

@matentzn
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matentzn commented Nov 9, 2022

@udp @cmungall also gave his general nod for this, so I am now convinced we are on the right track.

@matentzn
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@udp do you want me to take over?

@jamesamcl
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@matentzn I'm off sick at the moment - feel free to finish if you like, or I'll be back next week.

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matentzn commented Nov 22, 2022

It also hit me a bit (some flu thing) - I think I would like it if you were to try and finish it :)

@cmungall
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note also this previous proposal:

Which generalizes mapping of literals to mapping of spans in texts

@matentzn
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@udp Can you take a look at the OAK suggestion, and look at how our profile overlaps / differs? I think it would be a good thing to avoid profile proliferation, but whatever works is fine!

@matentzn matentzn marked this pull request as ready for review July 30, 2023 09:34
@matentzn matentzn changed the title WIP: Adding SSSOM profile for literals Adding SSSOM profile for literals Aug 1, 2023
@matentzn matentzn merged commit 112d142 into master Aug 2, 2023
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@matentzn matentzn deleted the sssom-literal-profile branch August 2, 2023 12:21
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SSSOM: Separate profile for Literal Mappings
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