started adding axioms to plastic-related terms, addressing Environmen…

…tOntology#1168
marieALaporte · May 21, 2021 · 82d2d6b · 82d2d6b
1 parent 529e242
commit 82d2d6b
Showing 1 changed file with 16 additions and 2 deletions.
diff --git a/src/envo/envo-edit.owl b/src/envo/envo-edit.owl
@@ -39219,6 +39219,7 @@ AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_03500005>
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03500005> "anthropogenic litter"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03500005> <http://purl.obolibrary.org/obo/BFO_0000040>)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03500005> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/ENVO_01000665>))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03500005> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002353> <http://purl.obolibrary.org/obo/ENVO_06105108>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_03500006> (food desert)
 
@@ -40893,18 +40894,20 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_06105107> "Very large objects that are discarded are typically considered \"debris\", but this term is loosely defined and there are no standard size classifications which can be used to distinguish debris from litter."@en)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_06105107> "marine anthropogenic litter"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105107> <http://purl.obolibrary.org/obo/ENVO_03500005>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105107> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/ENVO_01000320>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_06105108> (littering)
 
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://doi.org/10.3390/environments7100073>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_06105108> "A waste disposal process during which waste is improperly disposed of into the environment."@en)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://doi.org/10.3390/environments7100073>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_06105108> "An anthropogenic environmental process during which waste is improperly disposed of into the environment."@en)
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_06105108> <https://orcid.org/0000-0002-2996-719X>)
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_06105108> <https://orcid.org/0000-0002-8166-0486>)
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_06105108> <http://orcid.org/0000-0003-1072-8081>)
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_06105108> "2021-05-04T14:13:18Z"^^xsd:dateTime)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_06105108> "envoPlastics")
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_06105108> "Very large objects that are discarded are typically considered \"debris\", but this term is loosely defined and there are no standard size classifications which can be used to distinguish debris from litter."@en)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_06105108> "littering"@en)
-SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105108> <http://purl.obolibrary.org/obo/ENVO_01001260>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105108> <http://purl.obolibrary.org/obo/ENVO_02500027>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105108> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_03500005>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_06105109> (litter role)
 
@@ -40940,6 +40943,8 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_06105111> "envoPlastics")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_06105111> "natural plastic"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105111> <http://purl.obolibrary.org/obo/ENVO_06105101>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105111> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002354> ObjectUnionOf(<http://purl.obolibrary.org/obo/ENVO_02500000> <http://purl.obolibrary.org/obo/GO_0008150>)))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105111> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002354> ObjectComplementOf(<http://purl.obolibrary.org/obo/ENVO_01000993>)))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_06105112> (synthetic plastic)
 
@@ -40980,6 +40985,7 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_06105114> "envoPlastics")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_06105114> "ghost fishing"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105114> <http://purl.obolibrary.org/obo/ENVO_02500027>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105114> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002608> <http://purl.obolibrary.org/obo/ENVO_06105115>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_06105115> (fishing gear)
 
@@ -40998,6 +41004,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_06105115> "envoPlastics")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_06105115> "fishing gear"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105115> <http://purl.obolibrary.org/obo/ENVO_00003074>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105115> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002331> <http://purl.obolibrary.org/obo/ENVO_06105113>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_06105116> (discarded fishing gear)
 
@@ -41078,10 +41085,12 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_06105120> "envoPlastics")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_06105120> "entanglement process"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105120> <http://purl.obolibrary.org/obo/ENVO_02500000>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105120> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/BFO_0000040> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000086> <http://purl.obolibrary.org/obo/PATO_0001846>))))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_06105121> (entanglement of organisms in marine debris)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_06105121> "An entanglement process during which organisms become entrapped in anthropogenic marine debris."@en)
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/ENVO_06105121> "We've added anthropogenic litter as an input, as the threshold between litter and debris is ambigious. See the notes on anthropogenic litter"@en)
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_06105121> <https://orcid.org/0000-0002-2996-719X>)
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_06105121> <https://orcid.org/0000-0002-8166-0486>)
 AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_06105121> <http://orcid.org/0000-0003-1072-8081>)
@@ -41090,6 +41099,9 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_06105121> "Examples of marine debris include boating gear, or fishing gear (active or derelict). Marine debris may be in water or on land."@en)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_06105121> "entanglement of organisms in marine debris"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105121> <http://purl.obolibrary.org/obo/ENVO_06105120>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105121> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/ENVO_03500005>))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105121> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/OBI_0100026>))
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105121> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/OBI_0100026> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000086> <http://purl.obolibrary.org/obo/PATO_0001846>))))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_06105122> (biopolymer)
 
@@ -41124,6 +41136,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/ENVO_06105124> "Very large objects that are discarded are typically considered \"debris\", but this term is loosely defined and there are no standard size classifications which can be used to distinguish debris from litter."@en)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_06105124> "coastal anthropogenic litter"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105124> <http://purl.obolibrary.org/obo/ENVO_03500005>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105124> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0001025> <http://purl.obolibrary.org/obo/ENVO_01000687>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_06105125> (plastic manufacturing process)
 
@@ -41139,6 +41152,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/ENVO_06105125> "envoPlastics")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_06105125> "plastic manufacturing process"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105125> <http://purl.obolibrary.org/obo/ENVO_01000993>)
+SubClassOf(<http://purl.obolibrary.org/obo/ENVO_06105125> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002234> <http://purl.obolibrary.org/obo/ENVO_06105101>))
 
 # Class: <http://purl.obolibrary.org/obo/ENVO_06105126> (weathering of plastic)