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pip instructions in setting up
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WardDeb committed Aug 9, 2024
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Expand Up @@ -38,6 +38,27 @@ Now, we should activate this environment:
conda activate snakePipes
Alternatively, snakePipes can also be installed using pip. You can clone a branch (given that it's version 3.0.0 or later) and just install with pip:

.. code:: bash
pip install .
Just make sure you have python 3.11 or later (cap by snakemake) in your environment.
In case you'd like to develop snakePipes, extra dependencies for the documentation:

.. code:: bash
pip install .[docs]
or for the pytests:

.. code:: bash
pip install .[actions]
Configuring snakePipes
----------------------

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