change paths rna test

maxplanck-ie · Jul 4, 2024 · fe83224 · fe83224
1 parent 112c853
commit fe83224
Showing 1 changed file with 18 additions and 1 deletion.
diff --git a/tests/test_mRNA.py b/tests/test_mRNA.py
@@ -58,7 +58,7 @@ def test_mrna(self, ifs):
         [
           'mRNA-seq',
           '-i',
-          Path('tests') / 'data' / 'mRNA',
+          Path('tests') / 'data' / 'mRNA_mIFNB',
           '-o',
           'test_mrna',
           '--clusterConfig',
@@ -67,4 +67,21 @@ def test_mrna(self, ifs):
         ]
       )
       assert Path('test_mrna/mRNA-seq_snakePipes.done').is_file() == True
+
+    def test_mrna4(self, ifs):
+      org = ifs / 'org.yaml'
+      clusterconfig = Path('tests') / 'data' / 'cluster_config.yaml'
+      sp.run(
+        [
+          'mRNA-seq',
+          '-i',
+          Path('tests') / 'data' / 'mRNA_BcellPancreas',
+          '-o',
+          'test_mrna_4sample',
+          '--clusterConfig',
+          clusterconfig,
+          org
+        ]
+      )
+      assert Path('test_mrna_4sample/mRNA-seq_snakePipes.done').is_file() == True