Update cmr version and modification in the cython interface

[xuluze]

📝 Checklist

• The title is concise, informative, and self-explanatory.
• The description explains in detail what this PR is about.
• I have linked a relevant issue or discussion.
• I have created tests covering the changes.
• I have updated the documentation accordingly.

⌛ Dependencies

[xuluze]

There are still issues when I build this version:
(1) After rebuilding sage, it shows Warning: sage.all is not available; this is a limited REPL.
Maybe this is a reason that I cannot run ./sage -t src/sage/matrix/matrix_cmr_sparse.pyx, which outputs error message:

File "sage/matrix/matrix_integer_dense.pyx", line 1, in init sage.matrix.matrix_integer_dense
ImportError: /home/xuluze/mambaforge/envs/sage-cmr/lib/libffpack.so.1: undefined symbol: _ZN5FFLAS7fscalinIN6Givaro15ModularBalancedIfEEEEvRKT_mmNS4_7ElementENS4_11Element_ptrEm

(2) Some functions in cmr.pxd from matroid.h is commented out, for example, CMRmatroiddecGraphForest.
This is because some error occurs like:
'CMR_ELEMENT' is not a type identifier
'CMR_GRAPH_EDGE' is not a type identifier

(3) CMRdecIsSpecialLeaf and CMRdecIsSum does not have a matroiddec replacement yet, but we may need to test if it is available in other updated functions

[mkoeppe]

To fix the importerror, try what is documented here (https://deploy-preview-37411--sagemath.netlify.app/html/en/installation/source#caveats-when-upgrading-system-packages) to fix the build