Various MIMIC-IV fixes and improvements #370
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main, "release/*", "dev"] | |
| jobs: | |
| run_tests_ubuntu: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.11", "3.12"] | |
| fail-fast: false | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install packages | |
| run: | | |
| pip install -e .[tests] | |
| #---------------------------------------------- | |
| # run test suite | |
| #---------------------------------------------- | |
| - name: Run tests | |
| run: | | |
| pytest -v --doctest-modules --cov=src --junitxml=junit.xml -s --ignore=docs | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4.0.1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Upload test results to Codecov | |
| if: ${{ !cancelled() }} | |
| uses: codecov/test-results-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |