MRG, BUG: Fix errors in IO/loading/projectors #8210
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larsoner
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|
Okay, should be all good now @agramfort |
agramfort
reviewed
Sep 4, 2020
| @@ -102,7 +102,9 @@ def test_gdf2_data(): | |||
| # gh-5604 | |||
| assert raw.info['meas_date'] is None | |||
| _test_raw_reader(read_raw_gdf, input_fname=gdf2_path + '.gdf', | |||
| eog=None, misc=None) | |||
| eog=None, misc=None, | |||
| test_scaling=False, # XXX this should be True | |||
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you mean it's not working yet on gdf data?
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The values seem too large. Each of these requires some investigation. I think it should be done in another PR. It's possible nothing is broken but it would be good to understand why the EEG values are around 0.01 even after removing the mean or applying an average reference (for example)
| @@ -57,7 +57,10 @@ | |||
| def test_egi_mff_pause(fname, skip_times, event_times): | |||
| """Test EGI MFF with pauses.""" | |||
| with pytest.warns(RuntimeWarning, match='Acquisition skips detected'): | |||
| raw = _test_raw_reader(read_raw_egi, input_fname=fname) | |||
| raw = _test_raw_reader(read_raw_egi, input_fname=fname, | |||
| test_scaling=False, # XXX probably some bug | |||
larsoner
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Sep 9, 2020
* upstream/master: (489 commits) MRG, DOC: Fix ICA docstring, add whitening (mne-tools#8227) MRG: Extract measurement date and age for NIRX files (mne-tools#7891) Nihon Kohden EEG file reader WIP (mne-tools#6017) BUG: Fix scaling for src_mri_t in coreg (mne-tools#8223) MRG: Set pyvista as default 3d backend (mne-tools#8220) MRG: Recreate our helmet graphic (mne-tools#8116) [MRG] Adding get_montage for montage to BaseRaw objects (mne-tools#7667) ENH: Allow setting tqdm backend (mne-tools#8177) [MRG, IO] Persyst reader into Raw object (mne-tools#8176) MRG, BUG: Fix errors in IO/loading/projectors (mne-tools#8210) MAINT: vectorize _read_annotations_edf (mne-tools#8214) FIX : events_from_annotation when annotations.orig_time is None and f… (mne-tools#8209) FIX: do not project to sphere; DOC - explain how to get EEGLAB-like topoplots (mne-tools#7455) [MRG, DOC] Added linear algebra of transform to doc (mne-tools#7087) FIX: Travis failure on python3.8.1 (mne-tools#8207) BF: String formatting in exception message (mne-tools#8206) BUG: Fix STC limit bug (mne-tools#8202) MRG, DOC: fix ica tutorial (mne-tools#8175) CSP component order selection (mne-tools#8151) MRG, ENH: Add on_missing to plot_events (mne-tools#8198) ...
marsipu
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Oct 14, 2020
* WIP: Expose errors * WIP * WIP * FIX: Almost * FIX: Better test * FIX: Fix bugs * FIX: More lenient
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I wanted to add a tiny test to #8176 to ensure
_mult_cal_oneis used properly, but I found out it's not used properly in a number of existing readers. Basically it means (I think) that for all readers for a non-preloadedraw:raw.apply_proj().load_data().get_data()was broken (fix WIP)raw.apply_proj().pick(...)was broken (now disallowed; we didn't allow this until this release cycle so not so bad)_mult_cal_onewas not used properly, so projectors were not applied when data were not preloadedThis sounds bad, but
(1)hopefully isn't too common a practice, (2) is within-release and probably rare, and (3) affects formats where using projections are less common (and using a patterns involving not preloading that are hopefully uncommon).