eBSCgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL).
The tool is deployed online as a part of BioDivine Galaxy toolset.
For more information about the tool, see Wiki.
To get started with the usage of Galaxy Platform and eBCSgen, we recommend this tutorial.
Install eBCSgen from Bioconda with:
# install eBCSgen in a new virtual environment to avoid dependency clashes
conda create --name eBCSgen python=3.9
conda activate eBCSgen
conda install --channel bioconda --channel conda-forge eBCSgen
You can also use prebuild docker image.
eBCSgen is also available as a series of Galaxy tools available in the main toolshed.
Create your development environment using the provided script via conda to install all required dependencies.
We appreciate contributions - feel free to open an issue on our repository, create your own fork, work on the problem and post a PR. Please adhere to the versioning.
All functionality is tested with the pytest framework.