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Use CATMAID stack info to create xarray.DataArrays #105

Use CATMAID stack info to create xarray.DataArrays

Use CATMAID stack info to create xarray.DataArrays #105

Workflow file for this run

name: Tests
on: [push, pull_request]
jobs:
build:
runs-on: ubuntu-latest
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}-${{ matrix.python-version }}-${{ matrix.igraph }}
cancel-in-progress: true
strategy:
fail-fast: false
matrix:
python-version:
- '3.9'
- '3.10'
- '3.11'
igraph: ["igraph", "no-igraph"]
steps:
# # This cancels any such job that is still runnning
# - name: Cancel Previous Runs
# uses: styfle/cancel-workflow-action@0.6.0
# with:
# access_token: ${{ github.token }}
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Linux libraries
run: |
sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 graphviz graphviz-dev
- name: Install dependencies
run: |
pip install --upgrade pip
pip install pathos imageio
pip install pytest coveralls pytest-cov
- name: Install pymaid
run: pip install -e .
- run: pip install python-igraph
if: ${{ matrix.igraph == 'igraph' }}
- name: Report dependency versions
run: pip freeze -r requirements.txt
- name: Test
run: |
pytest --cov=./ --verbose
# coveralls