ValueError: mapping_justification must be supplied

[caufieldjh]

When running a fresh transform like the following:

python run.py --input ../Bioportal/4store-export-2022-07-20/data/ --get_bioportal_metadata --ncbo_key [key] --remap_types --write_curies

the process fails upon trying to load the SSSOM maps:

Looking for records in ../Bioportal/4store-export-2022-07-20/data/
976 files found.
Setting up ROBOT...
ROBOT path: /home/harry/BioPortal-to-KGX/robot
ROBOT evironment variables: -Xmx12g -XX:+UseG1GC
Loading type maps from mappings/
WARNING:root:No prefix map provided (not recommended), trying to use defaults..
Traceback (most recent call last):
  File "run.py", line 81, in <module>
    run()
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/click/core.py", line 829, in __call__
    return self.main(*args, **kwargs)
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/click/core.py", line 782, in main
    rv = self.invoke(ctx)
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/click/core.py", line 1066, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/click/core.py", line 610, in invoke
    return callback(*args, **kwargs)
  File "run.py", line 69, in run
    transform_status = do_transforms(data_filepaths, kgx_validate, robot_validate, pandas_validate, 
  File "/home/harry/BioPortal-to-KGX/bioportal_to_kgx/functions.py", line 121, in do_transforms
    this_table = read_sssom_table(os.path.join(MAPPING_DIR,filepath))
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/deprecation.py", line 260, in _inner
    return function(*args, **kwargs)
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/sssom/parsers.py", line 84, in read_sssom_table
    return parse_sssom_table(
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/sssom/parsers.py", line 183, in parse_sssom_table
    msdf = from_sssom_dataframe(
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/sssom/parsers.py", line 382, in from_sssom_dataframe
    mlist.append(_prepare_mapping(Mapping(**mdict)))
  File "<string>", line 42, in __init__
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/sssom_schema/datamodel/sssom_schema.py", line 258, in __post_init__
    self.MissingRequiredField("mapping_justification")
  File "/home/harry/bioportal-to-kgx-env/lib/python3.8/site-packages/linkml_runtime-1.2.0rc3-py3.8.egg/linkml_runtime/utils/yamlutils.py", line 246, in MissingRequiredField
    raise ValueError(f"{field_name} must be supplied")
ValueError: mapping_justification must be supplied

As the stack trace indicates, this is due to a missing required field in the maps as per the sssom_schema.
They need to include mapping_justification.

[caufieldjh]

See also: mapping-commons/sssom#150
mapping_justification replaces match_type.