Merge pull request #432 from ncihtan/Model-Channel-Metadata-Add-Dye/S…

…tain Channel Metadata Model Updated
ncihtan · Jun 28, 2024 · 9f9ac1e · 9f9ac1e
2 parents 5644916 + 6329af7
commit 9f9ac1e
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Showing 2 changed files with 23 additions and 3 deletions.
diff --git a/HTAN.model.csv b/HTAN.model.csv
@@ -222,9 +222,9 @@ Channel QC Failure Comment,Custom comment on channel QC faliure,,,,FALSE,Imaging
 Cycle Number,The cycle # in which the co-listed reagent(s) was(were) used. Integer >= 1 (up to number of cycles),,,,FALSE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,int
 Sub Cycle Number,Sub cycle number,,,,FALSE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,int
 Target Name,Short descriptive name (abbreviation) for this target (antigen),,,,TRUE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
-Antibody Role," ""Is this antibody acting as a primary or secondary antibody""","Primary,Secondary",,,TRUE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
+Antibody Role," ""Is this antibody acting as a primary or secondary antibody""","Primary,Secondary,Neither-Dye/Stain",,,TRUE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
 Antibody Name,"Antibody Name (free text (eg “Keratin”, “CD163”, “DNA”))",,,,TRUE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
-RRID identifier,Research Resource Identifier (eg “RRID: AB_394606”),,,,TRUE,Imaging Level 3 Channels,,https://scicrunch.org/resources,regex match AB_\d+
+RRID identifier,Research Resource Identifier (eg “RRID: AB_394606”),,,,TRUE,Imaging Level 3 Channels,,https://scicrunch.org/resources,regex match AB_\d+|Not\sApplicable$
 Fluorophore,Fluorescent dye label (eg Alexa Fluor 488),,,,FALSE,Imaging Level 3 Channels,,http://purl.obolibrary.org/obo/MI_0857,
 Clone,Clone,,,,FALSE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,
 Lot,Lot number from vendor,,,,FALSE,Imaging Level 3 Channels,,https://www.miti-consortium.org/,

diff --git a/HTAN.model.jsonld b/HTAN.model.jsonld
@@ -49391,6 +49391,9 @@
                 },
                 {
                     "@id": "bts:Secondary"
+                },
+                {
+                    "@id": "bts:Neither-Dye/Stain"
                 }
             ],
             "sms:displayName": "Antibody Role",
@@ -49447,7 +49450,7 @@
             "sms:displayName": "RRID identifier",
             "sms:required": "sms:true",
             "sms:validationRules": [
-                "regex match AB_\\d+"
+                "regex match AB_\\d+|Not\\sApplicable$"
             ]
         },
         {
@@ -50228,6 +50231,23 @@
             "sms:required": "sms:false",
             "sms:validationRules": []
         },
+        {
+            "@id": "bts:Neither-Dye/Stain",
+            "@type": "rdfs:Class",
+            "rdfs:comment": "TBD",
+            "rdfs:label": "Neither-Dye/Stain",
+            "rdfs:subClassOf": [
+                {
+                    "@id": "bts:AntibodyRole"
+                }
+            ],
+            "schema:isPartOf": {
+                "@id": "http://schema.biothings.io"
+            },
+            "sms:displayName": "Neither-Dye/Stain",
+            "sms:required": "sms:false",
+            "sms:validationRules": []
+        },
         {
             "@id": "bts:H",
             "@type": "rdfs:Class",