Upload data from fauna to S3 #37
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| name: Upload data from fauna to S3 | |
| # Only support manual trigger of this workflow. | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| triggerPublic: | |
| description: "Trigger Nextstrain public builds" | |
| required: true | |
| type: boolean | |
| publicDockerImage: | |
| description: "Specific container image to use for Nextstrain public builds" | |
| required: false | |
| type: string | |
| triggerPrivateNextflu: | |
| description: "Trigger private Nextflu builds" | |
| required: true | |
| type: boolean | |
| privateNextfluDockerImage: | |
| description: "Specific container image to use for private Nextflu builds" | |
| required: false | |
| type: string | |
| jobs: | |
| upload: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| # Install Nextstrain CLI, so we can run the flu workflow. | |
| - uses: nextstrain/.github/actions/setup-nextstrain-cli@master | |
| # Run the flu workflow that downloads titers and sequences from fauna and | |
| # uploads to S3. | |
| - name: Download from fauna and upload to S3 | |
| run: | | |
| set -x | |
| nextstrain build \ | |
| --docker \ | |
| . \ | |
| -j 4 \ | |
| upload_all_titers \ | |
| upload_all_raw_sequences \ | |
| upload_all_sequences \ | |
| upload_all_metadata \ | |
| --configfile profiles/upload.yaml | |
| env: | |
| RETHINK_HOST: ${{ secrets.RETHINK_HOST }} | |
| RETHINK_AUTH_KEY: ${{ secrets.RETHINK_AUTH_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| trigger-public-builds: | |
| needs: [upload] | |
| if: ${{ inputs.triggerPublic }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Trigger Nextstrain public builds | |
| run: | | |
| gh workflow run \ | |
| run-public-builds.yaml \ | |
| --repo nextstrain/seasonal-flu \ | |
| -f dockerImage=${{ github.event.inputs.publicDockerImage }} | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| trigger-private-nextflu-builds: | |
| needs: [upload] | |
| if: ${{ inputs.triggerPrivateNextflu }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Trigger private Nextflu builds | |
| run: | | |
| gh workflow run \ | |
| run-private-nextflu-builds.yaml \ | |
| --repo nextstrain/seasonal-flu \ | |
| -f dockerImage=${{ github.event.inputs.privateNextfluDockerImage }} | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} |