annotate

nf-core · Sep 13, 2024 · a87672e · a87672e
1 parent 3af2b52
commit a87672e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/raredisease.nf b/workflows/raredisease.nf
@@ -568,7 +568,7 @@ workflow RAREDISEASE {
         //
         // ANNOTATE MT SNVs
         //
-        if (!params.skip_mt_annotation && (params.run_mt_for_wes || params.analysis_type.equals("wgs"))) {
+        if (!params.skip_mt_annotation && (params.run_mt_for_wes || params.analysis_type.matches("wgs|mito"))) {
 
             ANNOTATE_MT_SNVS (
                 CALL_SNV.out.mt_vcf,