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fix lint
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ramprasadn committed Sep 13, 2024
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Expand Up @@ -108,7 +108,7 @@ nf-core/raredisease will auto-detect whether a sample is single- or paired-end u
| `lane` | Used to generate separate channels during the alignment step. It is of string type, and we recommend using a combination of flowcell and lane to distinguish between different runs of the same sample. |
| `fastq_1` | Absolute path to FASTQ file for Illumina short reads 1. File has to be gzipped and have the extension ".fastq.gz" or ".fq.gz". |
| `fastq_2` | Absolute path to FASTQ file for Illumina short reads 2. File has to be gzipped and have the extension ".fastq.gz" or ".fq.gz". |
| `sex` | Sex (1=male; 2=female; for unknown sex use 0 or 'other'). |
| `sex` | Sex (1=male; 2=female; for unknown sex use 0 or 'other'). |
| `phenotype` | Affected status of patient (0 = missing; 1=unaffected; 2=affected). |
| `paternal_id` | Sample ID of the father, can be blank if the father isn't part of the analysis or for samples other than the proband. |
| `maternal_id` | Sample ID of the mother, can be blank if the mother isn't part of the analysis or for samples other than the proband. |
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