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Refresh external resources May 24 Release (#3275)
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* refresh external resources

* revert uberon-dmba bridge

---------

Co-authored-by: Anita Caron <anitacaron@users.noreply.github.com>
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Anita Caron and anitacaron authored May 13, 2024
1 parent 0085c4b commit 2b75cf8
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Showing 50 changed files with 32,081 additions and 15,149 deletions.
884 changes: 447 additions & 437 deletions src/mappings/fbbt.sssom.tsv

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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-aeo.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-aeo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-aeo.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-caro.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-caro.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-caro.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ehdaa2.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-ehdaa2.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-ehdaa2.owl"/>
<terms:contributor>Jonathan Bard</terms:contributor>
<terms:creator>CL editors</terms:creator>
<terms:description>Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA.</terms:description>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-emapa.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-emapa.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-emapa.owl"/>
<terms:creator>Anne Niknejad</terms:creator>
<terms:creator>Aurelie Comte</terms:creator>
<terms:creator>CL editors</terms:creator>
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231 changes: 228 additions & 3 deletions src/ontology/bridge/cl-bridge-to-fbbt.owl
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Expand Up @@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fbbt.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-fbbt.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-fbbt.owl"/>
<terms:contributor>David Osumi-Sutherland</terms:contributor>
<terms:creator>CL editors</terms:creator>
<terms:description>Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and CL.</terms:description>
Expand Down Expand Up @@ -225,6 +225,12 @@



<!-- http://purl.obolibrary.org/obo/CL_0000210 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000210"/>



<!-- http://purl.obolibrary.org/obo/CL_0000300 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000300"/>
Expand Down Expand Up @@ -441,12 +447,60 @@



<!-- http://purl.obolibrary.org/obo/CL_0000687 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000687"/>



<!-- http://purl.obolibrary.org/obo/CL_0000690 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000690"/>



<!-- http://purl.obolibrary.org/obo/CL_0000694 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000694"/>



<!-- http://purl.obolibrary.org/obo/CL_0000697 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000697"/>



<!-- http://purl.obolibrary.org/obo/CL_0000700 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000700"/>



<!-- http://purl.obolibrary.org/obo/CL_0000702 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000702"/>



<!-- http://purl.obolibrary.org/obo/CL_0000705 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000705"/>



<!-- http://purl.obolibrary.org/obo/CL_0000707 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000707"/>



<!-- http://purl.obolibrary.org/obo/CL_0000709 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000709"/>



<!-- http://purl.obolibrary.org/obo/CL_0000715 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000715"/>
Expand Down Expand Up @@ -778,15 +832,167 @@
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_2000019"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000210"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>compound eye photoreceptor cell (drosophila)</obo:IAO_0000589>
<obo:IAO_0000589>photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/FBbt_00004213 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004213">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000687"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>R1 photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/FBbt_00004215 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004215">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000690"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>R2 photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/FBbt_00004217 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004217">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000694"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>R3 photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/FBbt_00004219 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004219">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000697"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>R4 photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/FBbt_00004221 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004221">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000702"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>R5 photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/FBbt_00004223 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004223">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000705"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>R6 photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/FBbt_00004225 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004225">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000707"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>R7 photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/FBbt_00004227 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00004227">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000709"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>R8 photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>


Expand Down Expand Up @@ -1741,6 +1947,25 @@



<!-- http://purl.obolibrary.org/obo/FBbt_00006009 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00006009">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_2000019"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7227"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000589>compound eye photoreceptor cell (drosophila)</obo:IAO_0000589>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/FBbt_00007002 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/FBbt_00007002">
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-fma.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-fma.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-fma.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-fma.owl"/>
<terms:contributor>Onard Mejino</terms:contributor>
<terms:contributor>Terry Hayamizu</terms:contributor>
<terms:creator>CL editors</terms:creator>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-go.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-go.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-go.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-go.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-kupo.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-kupo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-kupo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-kupo.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ma.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ma.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-ma.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-ma.owl"/>
<terms:contributor>George Gkoutos</terms:contributor>
<terms:creator>CL editors</terms:creator>
<terms:creator>Terry Hayamizu</terms:creator>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ncit.owl
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xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ncit.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-ncit.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-ncit.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-sctid.owl
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xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-sctid.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-sctid.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-sctid.owl"/>
<terms:contributor>OBOL</terms:contributor>
<terms:creator>CL editors</terms:creator>
<terms:description>Rough subclass axioms between SNOMED-CT and CL. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree.</terms:description>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-wbbt.owl
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Expand Up @@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-wbbt.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-wbbt.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-wbbt.owl"/>
</owl:Ontology>


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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-xao.owl
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Expand Up @@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-xao.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-xao.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-xao.owl"/>
<terms:contributor>Erik Segerdell</terms:contributor>
<terms:contributor>VG Ponferrada</terms:contributor>
<terms:creator>CL editors</terms:creator>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-zfa.owl
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Expand Up @@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-zfa.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/bridge/cl-bridge-to-zfa.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/bridge/cl-bridge-to-zfa.owl"/>
<terms:contributor>Melissa Haendel</terms:contributor>
<terms:contributor>Veri Van Slyke</terms:contributor>
<terms:contributor>Yvonne Bradford</terms:contributor>
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