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Fix the Allen ontologies used in composite-metazoan #3134

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merged 3 commits into from
Dec 7, 2023
Merged

Fix the Allen ontologies used in composite-metazoan #3134

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44779d5
Do not generate the Allen ontologies from JSON.
gouttegd Dec 5, 2023
f681f32
Fix PURLs for the DHBA/HBA/PBA bridges.
gouttegd Dec 5, 2023
7353e84
Commit re-generated files.
gouttegd Dec 5, 2023
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6 changes: 3 additions & 3 deletions src/ontology/bridge/bridges.rules.m4
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Original file line number Diff line number Diff line change
Expand Up @@ -6,15 +6,15 @@ prefix BFO: <http://purl.obolibrary.org/obo/BFO_>
prefix BSPO: <http://purl.obolibrary.org/obo/BSPO_>
prefix CARO: <http://purl.obolibrary.org/obo/CARO_>
prefix CL: <http://purl.obolibrary.org/obo/CL_>
prefix DHBA: <http://purl.obolibrary.org/obo/DHBA_>
prefix DHBA: <https://purl.brain-bican.org/ontology/dhbao/DHBA_>
prefix EHDAA2: <http://purl.obolibrary.org/obo/EHDAA2_>
prefix EMAPA: <http://purl.obolibrary.org/obo/EMAPA_>
prefix FBbt: <http://purl.obolibrary.org/obo/FBbt_>
prefix FBdv: <http://purl.obolibrary.org/obo/FBdv_>
prefix FMA: <http://purl.obolibrary.org/obo/FMA_>
prefix GO: <http://purl.obolibrary.org/obo/GO_>
prefix HAO: <http://purl.obolibrary.org/obo/HAO_>
prefix HBA: <http://purl.obolibrary.org/obo/HBA_>
prefix HBA: <https://purl.brain-bican.org/ontology/hbao/HBA_>
prefix HsapDv: <http://purl.obolibrary.org/obo/HsapDv_>
prefix IAO: <http://purl.obolibrary.org/obo/IAO_>
prefix KUPO: <http://purl.obolibrary.org/obo/KUPO_>
Expand All @@ -25,7 +25,7 @@ prefix NCIT: <http://purl.obolibrary.org/obo/NCIT_>
prefix OG: <http://purl.obolibrary.org/obo/OG_>
prefix OGES: <http://purl.obolibrary.org/obo/OGES_>
prefix OIO: <http://www.geneontology.org/formats/oboInOwl#>
prefix PBA: <http://purl.obolibrary.org/obo/PBA_>
prefix PBA: <https://purl.brain-bican.org/ontology/pbao/PBA_>
prefix RO: <http://purl.obolibrary.org/obo/RO_>
prefix SCTID: <http://purl.obolibrary.org/obo/SCTID_>
prefix SPD: <http://purl.obolibrary.org/obo/SPD_>
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24,964 changes: 12,482 additions & 12,482 deletions src/ontology/bridge/uberon-bridge-to-dhba.owl
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18,694 changes: 9,347 additions & 9,347 deletions src/ontology/bridge/uberon-bridge-to-hba.owl
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2,788 changes: 1,394 additions & 1,394 deletions src/ontology/bridge/uberon-bridge-to-pba.owl
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10 changes: 5 additions & 5 deletions src/ontology/catalog-v001.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,18 +4,18 @@
<uri name="http://purl.obolibrary.org/obo/ceph.owl" uri="imports/local-ceph.owl"/>
<uri name="http://purl.obolibrary.org/obo/cl.owl" uri="imports/local-cl.owl"/>
<uri name="http://purl.obolibrary.org/obo/cteno.owl" uri="imports/local-cteno.owl"/>
<uri name="http://purl.obolibrary.org/obo/dhba.owl" uri="imports/local-allen-dhba.obo"/>
<uri name="http://purl.obolibrary.org/obo/dmba.owl" uri="imports/local-allen-dmba.obo"/>
<uri name="http://purl.obolibrary.org/obo/dhba.owl" uri="imports/local-allen-dhba.owl"/>
<uri name="http://purl.obolibrary.org/obo/dmba.owl" uri="imports/local-allen-dmba.owl"/>
<uri name="http://purl.obolibrary.org/obo/ehdaa2.owl" uri="imports/local-ehdaa2.owl"/>
<uri name="http://purl.obolibrary.org/obo/emapa.owl" uri="imports/local-emapa.owl"/>
<uri name="http://purl.obolibrary.org/obo/fbbt.owl" uri="imports/local-fbbt.owl"/>
<uri name="http://purl.obolibrary.org/obo/fbdv.owl" uri="imports/local-fbdv.owl"/>
<uri name="http://purl.obolibrary.org/obo/hba.owl" uri="imports/local-allen-hba.obo"/>
<uri name="http://purl.obolibrary.org/obo/hba.owl" uri="imports/local-allen-hba.owl"/>
<uri name="http://purl.obolibrary.org/obo/hsapdv.owl" uri="imports/local-hsapdv.owl"/>
<uri name="http://purl.obolibrary.org/obo/ma.owl" uri="imports/local-ma.owl"/>
<uri name="http://purl.obolibrary.org/obo/mba.owl" uri="imports/local-allen-mba.obo"/>
<uri name="http://purl.obolibrary.org/obo/mba.owl" uri="imports/local-allen-mba.owl"/>
<uri name="http://purl.obolibrary.org/obo/mmusdv.owl" uri="imports/local-mmusdv.owl"/>
<uri name="http://purl.obolibrary.org/obo/pba.owl" uri="imports/local-allen-pba.obo"/>
<uri name="http://purl.obolibrary.org/obo/pba.owl" uri="imports/local-allen-pba.owl"/>
<uri name="http://purl.obolibrary.org/obo/poro.owl" uri="imports/local-poro.owl"/>
<uri name="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl" uri="bridge/cl-bridge-to-ehdaa2.owl"/>
<uri name="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl" uri="bridge/cl-bridge-to-emapa.owl"/>
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