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2023-06-28 Release #728

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merged 9 commits into from
Jul 3, 2023
Merged

2023-06-28 Release #728

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2d832b0
release
anitacaron Jun 21, 2023
d489c91
Merge branch 'master' into release-2023-06
anitacaron Jun 22, 2023
f883a9d
update release
anitacaron Jun 22, 2023
b801a29
fix xref chebi
anitacaron Jun 23, 2023
c0ecc1d
update go links to use anyURI datatype
anitacaron Jun 23, 2023
b0d6bdd
update release
anitacaron Jun 23, 2023
23cb30d
Merge branch 'master' into release-2023-06
anitacaron Jun 28, 2023
e3282e2
Merge branch 'master' into release-2023-06
anitacaron Jun 28, 2023
118d5eb
release 2023-06-28
anitacaron Jun 28, 2023
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4 changes: 2 additions & 2 deletions core.json
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Expand Up @@ -7,12 +7,12 @@
"val" : "https://creativecommons.org/publicdomain/zero/1.0/"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2023-02-22"
"val" : "2023-06-23"
}, {
"pred" : "http://xmlns.com/foaf/0.1/homepage",
"val" : "https://github.com/oborel/obo-relations/wiki/ROCore"
} ],
"version" : "http://purl.obolibrary.org/obo/ro/releases/2023-02-22/core.json"
"version" : "http://purl.obolibrary.org/obo/ro/releases/2023-06-23/core.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/BFO_0000002",
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4 changes: 2 additions & 2 deletions core.obo
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@@ -1,9 +1,9 @@
format-version: 1.2
data-version: ro/releases/2023-02-22/core.owl
data-version: ro/releases/2023-06-23/core.owl
ontology: ro/core
property_value: http://purl.org/dc/elements/1.1/license https://creativecommons.org/publicdomain/zero/1.0/
property_value: http://xmlns.com/foaf/0.1/homepage "https://github.com/oborel/obo-relations/wiki/ROCore" xsd:anyURI
property_value: owl:versionInfo "2023-02-22" xsd:string
property_value: owl:versionInfo "2023-06-23" xsd:string

[Term]
id: BFO:0000002
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4 changes: 2 additions & 2 deletions core.owl
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Expand Up @@ -13,9 +13,9 @@
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro/core.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-02-22/core.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-06-23/core.owl"/>
<dc:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
<owl:versionInfo>2023-02-22</owl:versionInfo>
<owl:versionInfo>2023-06-23</owl:versionInfo>
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/ROCore</foaf:homepage>
</owl:Ontology>

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682 changes: 553 additions & 129 deletions ro-base.json
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397 changes: 281 additions & 116 deletions ro-base.obo
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805 changes: 539 additions & 266 deletions ro-base.owl
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3,132 changes: 2,631 additions & 501 deletions ro-full.json
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1,068 changes: 650 additions & 418 deletions ro-full.obo
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2,449 changes: 1,986 additions & 463 deletions ro-full.owl
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3,132 changes: 2,631 additions & 501 deletions ro.json
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1,068 changes: 650 additions & 418 deletions ro.obo
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2,449 changes: 1,986 additions & 463 deletions ro.owl
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13 changes: 6 additions & 7 deletions src/ontology/imports/cl_import.owl
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Expand Up @@ -7,10 +7,10 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/ro/imports/cl_import.owl>
<http://purl.obolibrary.org/obo/ro/releases/2023-02-19/imports/cl_import.owl>
<http://purl.obolibrary.org/obo/ro/releases/2023-06-23/imports/cl_import.owl>
Annotation(<http://purl.obolibrary.org/obo/IAO_0000700> <http://purl.obolibrary.org/obo/CL_0000000>)
Annotation(<http://purl.org/dc/elements/1.1/description> "An ontology of cell types.")
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/cl/releases/2023-02-19/cl.owl>)
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/cl/releases/2023-06-22/cl.owl>)
Annotation(<http://purl.org/dc/elements/1.1/title> "Cell Ontology")
Annotation(<http://purl.org/dc/terms/contributor> <https://orcid.org/0000-0001-5208-3432>)
Annotation(<http://purl.org/dc/terms/contributor> <https://orcid.org/0000-0001-9114-8737>)
Expand All @@ -23,13 +23,13 @@ Annotation(<http://purl.org/dc/terms/contributor> <https://orcid.org/0000-0002-9
Annotation(<http://purl.org/dc/terms/contributor> <https://orcid.org/0000-0003-1980-3228>)
Annotation(<http://purl.org/dc/terms/license> <http://creativecommons.org/licenses/by/4.0/>)
Annotation(rdfs:comment "See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo.")
Annotation(owl:versionInfo "2023-02-19")
Annotation(owl:versionInfo "2023-06-22")
Annotation(owl:versionInfo "2023-06-23")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000004>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000040>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000000>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000101>))
Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000540>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000061>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000050>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002160>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002215>))
Expand Down Expand Up @@ -67,6 +67,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <ht
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CL_0000000> "XAO:0003012")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/CL_0000000> "The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0000000> "cell")
SubClassOf(<http://purl.obolibrary.org/obo/CL_0000000> <http://purl.obolibrary.org/obo/UBERON_0000061>)

# Class: <http://purl.obolibrary.org/obo/CL_0000101> (sensory neuron)

Expand All @@ -92,8 +93,6 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <ht
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CL_0000540> "nerve cell")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/CL_0000540> "These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0000540> "neuron")
SubClassOf(<http://purl.obolibrary.org/obo/CL_0000540> <http://purl.obolibrary.org/obo/BFO_0000004>)
SubClassOf(<http://purl.obolibrary.org/obo/CL_0000540> <http://purl.obolibrary.org/obo/BFO_0000040>)
SubClassOf(<http://purl.obolibrary.org/obo/CL_0000540> <http://purl.obolibrary.org/obo/CL_0000000>)


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7 changes: 4 additions & 3 deletions src/ontology/imports/envo_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/ro/imports/envo_import.owl>
<http://purl.obolibrary.org/obo/ro/releases/2023-02-19/imports/envo_import.owl>
<http://purl.obolibrary.org/obo/ro/releases/2023-06-23/imports/envo_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/contributor> <https://orcid.org/0000-0002-2996-719X>)
Annotation(<http://purl.org/dc/elements/1.1/creator> <https://orcid.org/0000-0002-4366-3088>)
Annotation(<http://purl.org/dc/elements/1.1/creator> "http://orcid.org/0000-0002-6601-2165")
Expand All @@ -26,17 +26,19 @@ Annotation(rdfs:comment "Includes Ontology(OntologyID(OntologyIRI(<http://purl.o
Annotation(rdfs:comment "Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/entity_quality_location.owl>) VersionIRI(<null>))) [Axioms: 40 Logical Axioms: 6]")
Annotation(rdfs:comment "Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/envo/modules/process_attribute.owl>) VersionIRI(<null>))) [Axioms: 21 Logical Axioms: 2]")
Annotation(owl:versionInfo "2023-02-13")
Annotation(owl:versionInfo "2023-02-19")
Annotation(owl:versionInfo "2023-06-23")
Annotation(<http://xmlns.com/foaf/0.1/homepage> "http://environmentontology.org/"^^xsd:anyURI)

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000015>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000016>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000040>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_01000254>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0008150>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBI_0100026>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0002124>))
Declaration(Class(<http://purl.obolibrary.org/obo/RO_0002577>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001062>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000050>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000051>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000066>))
Expand Down Expand Up @@ -76,7 +78,6 @@ Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000118>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000119>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/contributor>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/creator>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/date>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/description>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/source>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/title>))
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