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# frozen_string_literal: true | ||
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$SITE = 'Testportal' | ||
$UI_HOSTNAME = 'localhost' | ||
$UI_URL = "http://#{$UI_HOSTNAME}:3000" | ||
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$API_KEY = ENV['API_KEY'] | ||
$REST_URL = ENV['API_URL'] | ||
$BIOMIXER_URL = ENV['BIOMIXER_URL'] | ||
$ANNOTATOR_URL = $PROXY_URL = ENV['ANNOTATOR_URL'] | ||
$FAIRNESS_URL = ENV['ANNOTATOR_URL'] | ||
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# config/initializers/omniauth_providers.rb | ||
$OMNIAUTH_PROVIDERS = { | ||
github: { | ||
client_id: 'id', | ||
client_secret: 'secret', | ||
icon: 'icons/github.svg' | ||
}, | ||
google: { | ||
strategy: :google_oauth2, | ||
client_id: 'id', | ||
client_secret: 'secret', | ||
icon: 'icons/google.svg' | ||
}, | ||
orcid: { | ||
client_id: 'YOUR_ORCID_CLIENT_ID', | ||
client_secret: 'YOUR_ORCID_CLIENT_SECRET', | ||
icon: 'icons/orcid.svg' | ||
}, | ||
keycloak: { | ||
strategy: :keycloak_openid, | ||
client_id: 'YOUR_KEYCLOAK_CLIENT_ID', | ||
client_secret: 'YOUR_KEYCLOAK_CLIENT_SECRET', | ||
client_options: { site: 'KEYCLOAK_SITE', realm: 'KEYCLOAK_REALM' }, | ||
name: 'keycloak', | ||
icon: 'icons/keycloak.svg' | ||
} | ||
}.freeze | ||
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$INTERPORTAL_HASH = {} | ||
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# If your BioPortal installation includes Fairness score set this to true | ||
$FAIRNESS_DISABLED = false | ||
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# Pairing a name with an array of ontology virtual ids will allow you to filter ontologies based on a subdomain. | ||
# If your main UI is hosted at example.org and you add custom.example.org pointing to the same Rails installation | ||
# you could filter the ontologies visible at custom.example.org by adding this to the hash: "custom" => { :name => "Custom Slice", :ontologies => [1032, 1054, 1099] } | ||
# Any number of slices can be added. Groups are added automatically using the group acronym as the subdomain. | ||
$ENABLE_SLICES = true | ||
$ONTOLOGY_SLICES = {} | ||
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# Cube metrics reporting | ||
$ENABLE_CUBE = false | ||
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$NOT_DOWNLOADABLE = {} | ||
# Enable client request caching | ||
$CLIENT_REQUEST_CACHING = true | ||
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# If you don't use Airbrake you can have exceptions emailed to the $ERROR_EMAIL address by setting this to 'true' | ||
$EMAIL_EXCEPTIONS = false | ||
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# Announcements mailman mailing list REQUEST address, EX: list-request@lists.example.org | ||
# NOTE: You must use the REQUEST address for the mailing list. ONLY WORKS WITH MAILMAN LISTS. | ||
$ANNOUNCE_LIST ||= 'appliance-users-request@localhost' | ||
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# Email addresses used for sending notifications (errors, feedback, support) | ||
$SUPPORT_EMAIL ||= 'support@localhost' | ||
$ADMIN_EMAIL ||= 'admin@localhost' | ||
$ERROR_EMAIL ||= 'errors@localhost' | ||
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# Custom BioPortal logging | ||
require 'log' | ||
$REMOTE_LOGGING = false | ||
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## | ||
# Custom Ontology Details | ||
# Custom details can be added on a per ontology basis using a key/value pair as columns of the details table | ||
# | ||
# Example: | ||
# $ADDITIONAL_ONTOLOGY_DETAILS = { 1000 => { "Additional Detail" => "Text to be shown in the right-hand column." } } | ||
## | ||
$ADDITIONAL_ONTOLOGY_DETAILS = {} | ||
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# Site notice appears on all pages and remains closed indefinitely. Stored below as a hash with a unique key and a | ||
# EX: $SITE_NOTICE = { :unique_key => 'Put your message here (can include <a href="/link">html</a> if you use | ||
$SITE_NOTICE = {} | ||
################################ | ||
## AUTO-GENERATED DO NOT MODIFY | ||
################################# | ||
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# Full string for site, EX: "NCBO BioPortal" | ||
$ORG_SITE = $ORG.nil? || $ORG.empty? ? $SITE : "#{$ORG} #{$SITE}" | ||
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$HOME_PAGE_LOGOS = { | ||
supported_by: [ | ||
{ | ||
img_src: 'logos/supports/numev.png', | ||
url: 'http://www.lirmm.fr/numev', | ||
target: '_blank' | ||
}, | ||
{ | ||
img_src: 'logos/supports/anr.png', | ||
url: 'https://anr.fr/en', | ||
target: '_blank' | ||
}, | ||
{ | ||
img_src: 'logos/supports/eu.png', | ||
url: 'https://commission.europa.eu/research-and-innovation_en', | ||
target: '_blank' | ||
} | ||
], | ||
with_the_collaboration_of: [ | ||
{ | ||
img_src: 'logos/collaboration/d2kab.png', | ||
url: 'http://d2kab.mystrikingly.com', | ||
target: '_blank' | ||
}, | ||
{ | ||
img_src: 'logos/collaboration/lirmm.png', | ||
url: 'http://www.lirmm.fr', | ||
target: '_blank' | ||
}, | ||
{ | ||
img_src: 'logos/collaboration/inrae.png', | ||
url: 'https://www.inrae.fr/enm', | ||
target: '_blank' | ||
}, | ||
{ | ||
img_src: 'logos/collaboration/stanford.png', | ||
url: 'https://www.stanford.edu', | ||
target: '_blank' | ||
} | ||
] | ||
} | ||
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$FOOTER_LINKS = { | ||
social: [ | ||
{ logo: 'social/people.svg', link: 'https://github.com/orgs/agroportal/people' }, | ||
{ logo: 'social/github.svg', link: 'https://github.com/agroportal' }, | ||
{ logo: 'social/twitter.svg', link: 'https://twitter.com/lagroportal' } | ||
], | ||
sections: { | ||
products: { | ||
ontoportal: 'https://ontoportal.org/', | ||
release_notes: 'https://doc.jonquetlab.lirmm.fr/share/e6158eda-c109-4385-852c-51a42de9a412/doc/release-notes-btKjZk5tU2', | ||
api: 'https://data.agroportal.lirmm.fr/', | ||
sparql: 'https://sparql.agroportal.lirmm.fr/test/' | ||
}, | ||
support: { | ||
contact_us: 'https://agroportal.lirmm.fr/feedback', | ||
wiki: 'https://www.bioontology.org/wiki/', | ||
documentation: 'https://ontoportal.github.io/documentation/' | ||
}, | ||
agreements: { | ||
terms: '', | ||
privacy_policy: '', | ||
cite_us: '', | ||
acknowledgments: '' | ||
}, | ||
about: { | ||
about_us: 'https://github.com/agroportal/project-management', | ||
projects: 'https://d2kab.mystrikingly.com/', | ||
team: 'https://github.com/orgs/agroportal/people' | ||
} | ||
} | ||
} | ||
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$UI_THEME = :stageportal | ||
if File.exist?('config/bioportal_config_development_testportal.lirmm.fr.rb') | ||
require_relative 'bioportal_config_development_testportal.lirmm.fr' # local credentials | ||
end |
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Original file line number | Diff line number | Diff line change |
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# frozen_string_literal: true | ||
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require 'test_helper' | ||
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class ApplicationControllerTest < ActionDispatch::IntegrationTest | ||
test 'should show home page' do | ||
get '' | ||
assert_response :success | ||
end | ||
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test 'should show projects page' do | ||
get '/projects' | ||
assert_response :success | ||
end | ||
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test 'should show annotator page' do | ||
get '/annotator' | ||
assert_response :success | ||
end | ||
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test 'should show recommender page' do | ||
get '/recommender' | ||
assert_response :success | ||
end | ||
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test 'should show mapping page' do | ||
get '/mappings' | ||
assert_response :success | ||
end | ||
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test 'should show feedback page' do | ||
get '/feedback' | ||
assert_response :success | ||
end | ||
end |
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@@ -1,9 +1,11 @@ | ||
# frozen_string_literal: true | ||
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require 'test_helper' | ||
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class LandscapeControllerTest < ActionController::TestCase | ||
test "should get index" do | ||
test 'should get index' do | ||
skip('take too much time') | ||
get :index | ||
assert_response :success | ||
end | ||
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end |
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# frozen_string_literal: true | ||
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require 'test_helper' | ||
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class OntologiesControllerTest < ActionDispatch::IntegrationTest | ||
ONTOLOGIES = LinkedData::Client::Models::Ontology.all(include: 'acronym') | ||
PAGES = %w[summary classes properties notes mappings schemes collections widgets].freeze | ||
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test 'should return all the ontologies' do | ||
get ontologies_path | ||
assert_response :success | ||
end | ||
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ONTOLOGIES.sample(5).flat_map { |ont| PAGES.map { |page| [ont, page] } }.each do |ont, page| | ||
test "should get page #{page} of #{ont.acronym} ontology" do | ||
path = "#{ontologies_path}/#{ont.acronym}?p=#{page}" | ||
get path | ||
assert_response :success, "GET #{path} returned #{response.status}" | ||
end | ||
end | ||
end |