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Merge pull request #3 from lifewatch-eric/feature/ecoportal-to-agropo…
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…rtal-migration-script

Feature: Add ecoportal submission model migration script
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@syphax-bouazzouni
syphax-bouazzouni authored Jul 27, 2023
2 parents 6cc1f74 + 795d54a commit 78b3060
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5 changes: 3 additions & 2 deletions Gemfile
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Original file line number Diff line number Diff line change
Expand Up @@ -20,9 +20,9 @@ gem 'sys-proctable'
# Monitoring
gem 'cube-ruby', require: 'cube'

gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'master'
gem 'goo', git: 'https://github.com/ontoportal-lirmm/goo.git', branch: 'ecoportal'
gem 'sparql-client', github: 'ontoportal-lirmm/sparql-client', branch: 'master'
gem 'ontologies_linked_data', github: 'ontoportal-lirmm/ontologies_linked_data', branch: 'master'
gem 'ontologies_linked_data', git: 'https://github.com/lifewatch-eric/ontologies_linked_data.git', branch: 'ecoportal-ontoportal-reset'
gem 'ncbo_annotator', github: 'ontoportal-lirmm/ncbo_annotator', branch: 'master'
# Testing
group :test do
Expand All @@ -32,3 +32,4 @@ group :test do
gem 'test-unit-minitest'
end

gem "binding_of_caller", "~> 1.0"
116 changes: 55 additions & 61 deletions Gemfile.lock
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Original file line number Diff line number Diff line change
@@ -1,7 +1,27 @@
GIT
remote: https://github.com/lifewatch-eric/ontologies_linked_data.git
revision: d3b37592305574a54211a3d8ab804d385db301ad
branch: ecoportal-ontoportal-reset
specs:
ontologies_linked_data (0.0.1)
activesupport
bcrypt
goo
json
libxml-ruby
multi_json
oj
omni_logger
pony
rack
rack-test
rsolr
rubyzip

GIT
remote: https://github.com/ontoportal-lirmm/goo.git
revision: 92968978e5d2436c648bf7956e25aff05440b59d
branch: master
revision: c310e3854705b241a6259faad14cf6cd4eb97053
branch: ecoportal
specs:
goo (0.0.2)
addressable (~> 2.8)
Expand All @@ -24,27 +44,6 @@ GIT
redis
ruby-xxHash

GIT
remote: https://github.com/ontoportal-lirmm/ontologies_linked_data.git
revision: c98145605413e459d3c09a41d3c28a5acd0c49e4
branch: master
specs:
ontologies_linked_data (0.0.1)
activesupport
bcrypt
goo
json
libxml-ruby
multi_json
ncbo_resource_index
oj
omni_logger
pony
rack
rack-test
rsolr
rubyzip

GIT
remote: https://github.com/ontoportal-lirmm/sparql-client.git
revision: aed51baf4106fd0f3d0e3f9238f0aad9406aa3f0
Expand Down Expand Up @@ -75,15 +74,18 @@ GEM
activesupport (3.2.22.5)
i18n (~> 0.6, >= 0.6.4)
multi_json (~> 1.0)
addressable (2.8.1)
addressable (2.8.4)
public_suffix (>= 2.0.2, < 6.0)
bcrypt (3.1.18)
bcrypt (3.1.19)
binding_of_caller (1.0.0)
debug_inspector (>= 0.0.1)
builder (3.2.4)
coderay (1.1.3)
concurrent-ruby (1.1.10)
connection_pool (2.3.0)
concurrent-ruby (1.2.2)
connection_pool (2.4.1)
cube-ruby (0.0.3)
dante (0.2.0)
debug_inspector (1.1.0)
declarative (0.0.20)
docile (1.4.0)
domain_name (0.5.20190701)
Expand All @@ -92,7 +94,7 @@ GEM
htmlentities (~> 4.3.3)
launchy (~> 2.1)
mail (~> 2.6)
faraday (1.10.2)
faraday (1.10.3)
faraday-em_http (~> 1.0)
faraday-em_synchrony (~> 1.0)
faraday-excon (~> 1.1)
Expand All @@ -116,9 +118,9 @@ GEM
faraday-rack (1.0.0)
faraday-retry (1.0.3)
ffi (1.15.5)
google-apis-analytics_v3 (0.12.0)
google-apis-core (>= 0.9.1, < 2.a)
google-apis-core (0.9.2)
google-apis-analytics_v3 (0.13.0)
google-apis-core (>= 0.11.0, < 2.a)
google-apis-core (0.11.1)
addressable (~> 2.5, >= 2.5.1)
googleauth (>= 0.16.2, < 2.a)
httpclient (>= 2.8.1, < 3.a)
Expand All @@ -127,13 +129,13 @@ GEM
retriable (>= 2.0, < 4.a)
rexml
webrick
googleauth (1.3.0)
googleauth (1.7.0)
faraday (>= 0.17.3, < 3.a)
jwt (>= 1.4, < 3.0)
memoist (~> 0.16)
multi_json (~> 1.11)
os (>= 0.9, < 2.0)
signet (~> 0.15)
signet (>= 0.16, < 2.a)
htmlentities (4.3.4)
http-accept (1.7.0)
http-cookie (1.0.5)
Expand All @@ -143,10 +145,10 @@ GEM
concurrent-ruby (~> 1.0)
json (2.6.3)
json_pure (2.6.3)
jwt (2.6.0)
launchy (2.5.0)
addressable (~> 2.7)
libxml-ruby (3.2.4)
jwt (2.7.1)
launchy (2.5.2)
addressable (~> 2.8)
libxml-ruby (4.1.1)
logger (1.5.3)
macaddr (1.7.2)
systemu (~> 2.6.5)
Expand All @@ -156,23 +158,15 @@ GEM
method_source (1.0.0)
mime-types (3.4.1)
mime-types-data (~> 3.2015)
mime-types-data (3.2022.0105)
mime-types-data (3.2023.0218.1)
mini_mime (1.1.2)
minitest (4.7.5)
mlanett-redis-lock (0.2.7)
redis
multi_json (1.15.0)
multipart-post (2.1.1)
mysql2 (0.5.2)
multipart-post (2.3.0)
net-http-persistent (2.9.4)
netrc (0.11.0)
oauth2 (2.0.9)
faraday (>= 0.17.3, < 3.0)
jwt (>= 1.0, < 3.0)
multi_xml (~> 0.5)
rack (>= 1.2, < 4)
snaky_hash (~> 2.0)
version_gem (~> 1.1)
oj (2.18.5)
omni_logger (0.1.4)
logger
Expand All @@ -183,16 +177,16 @@ GEM
pry (0.14.2)
coderay (~> 1.1)
method_source (~> 1.0)
public_suffix (5.0.1)
rack (3.0.2)
rack-test (2.0.2)
public_suffix (5.0.3)
rack (3.0.8)
rack-test (2.1.0)
rack (>= 1.3)
rake (13.0.6)
rdf (1.0.8)
addressable (>= 2.2)
redis (5.0.5)
redis (5.0.6)
redis-client (>= 0.9.0)
redis-client (0.11.2)
redis-client (0.14.1)
connection_pool
representable (3.2.0)
declarative (< 0.1.0)
Expand All @@ -204,7 +198,7 @@ GEM
mime-types (>= 1.16, < 4.0)
netrc (~> 0.8)
retriable (3.1.2)
rexml (3.2.5)
rexml (3.2.6)
rsolr (2.5.0)
builder (>= 2.1.2)
faraday (>= 0.9, < 3, != 2.0.0)
Expand All @@ -213,10 +207,9 @@ GEM
rubyzip (2.3.2)
rufus-scheduler (2.0.24)
tzinfo (>= 0.3.22)
sequel (5.54.0)
signet (0.15.0)
addressable (~> 2.3)
faraday (>= 0.17.3, < 2.0)
signet (0.17.0)
addressable (~> 2.8)
faraday (>= 0.17.5, < 3.a)
jwt (>= 1.5, < 3.0)
multi_json (~> 1.10)
simplecov (0.22.0)
Expand All @@ -228,26 +221,27 @@ GEM
simplecov (~> 0.19)
simplecov-html (0.12.3)
simplecov_json_formatter (0.1.4)
sys-proctable (1.2.7)
sys-proctable (1.3.0)
ffi (~> 1.1)
systemu (2.6.5)
test-unit-minitest (0.9.1)
minitest (~> 4.7)
trailblazer-option (0.1.2)
tzinfo (2.0.5)
tzinfo (2.0.6)
concurrent-ruby (~> 1.0)
uber (0.1.0)
unf (0.1.4)
unf_ext
unf_ext (0.0.8.2)
uuid (2.3.9)
macaddr (~> 1.0)
webrick (1.8.1)

PLATFORMS
x86_64-darwin-21
x86_64-linux

DEPENDENCIES
binding_of_caller (~> 1.0)
cube-ruby
email_spec
faraday (~> 1.9)
Expand All @@ -274,4 +268,4 @@ DEPENDENCIES
test-unit-minitest

BUNDLED WITH
2.3.22
2.3.23
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