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TWIX: Extract software version, scanner info, and seq name (#172)
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* Extract software version, scanner info, and seq name when parsing header
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darrencl committed Jul 16, 2024
1 parent 5767c17 commit 86d3c37
Showing 1 changed file with 17 additions and 2 deletions.
19 changes: 17 additions & 2 deletions suspect/io/twix.py
Original file line number Diff line number Diff line change
Expand Up @@ -124,7 +124,6 @@ def get_meta_regex(regex_list, header_string, convert=1, default=None):


def parse_twix_header(header_string):
#print(header_string)
# get the name of the protocol being acquired
protocol_name_matches = [
r"tProtocolName\s*=\s*\"(.*)\"\s*"
Expand All @@ -144,6 +143,18 @@ def parse_twix_header(header_string):
exam_date_time = frame_of_reference.split(".")[10]
exam_date = exam_date_time[2:8]
exam_time = exam_date_time[8:14]

software_version_matches = [
r"<ParamString.\"tMeasuredBaselineString\">\s*{\s*(\".+\")\s*}\n",
r"<ParamString.\"tBaselineString\">\s*{\s*(\".+\")\s*}\n",
r"<ParamString.\"SoftwareVersions\">\s*{\s*(\".+\")\s*}\n"
]
software_version = get_meta_regex(software_version_matches, header_string)

manufacturer = re.search(r"<ParamString.\"Manufacturer\">\s*{\s*(\".+\")\s*}\n", header_string).group(1)
manufacturers_model_name = re.search(r"<ParamString.\"ManufacturersModelName\">\s*{\s*(\".+\")\s*}\n", header_string).group(1)
sequence_name = re.search(r"<ParamString.\"tSequenceFileName\">\s*{\s*(\".+\")\s*}\n", header_string).group(1)

# get the scan parameters
frequency_matches = [
r"sTXSPEC\.asNucleusInfo\[0\]\.lFrequency\s*=\s*([[0-9]*[.]?[0-9]*]{0,})\s*",
Expand Down Expand Up @@ -280,7 +291,11 @@ def parse_twix_header(header_string):
"te": te,
"tr": tr,
"exam_date": exam_date,
"exam_time": exam_time
"exam_time": exam_time,
"sequence_name": sequence_name,
"software_version": software_version,
"manufacturer": manufacturer,
"manufacturers_model_name": manufacturers_model_name
}


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