🚀 Anomalib Pipelines

src/anomalib/cli/cli.py

@@ -16,6 +16,7 @@
 from rich import traceback
 
 from anomalib import TaskType, __version__
+from anomalib.cli.pipelines import add_pipeline_subparsers, run_pipeline
 from anomalib.cli.utils.help_formatter import CustomHelpFormatter, get_short_docstring
 from anomalib.cli.utils.openvino import add_openvino_export_arguments
 from anomalib.loggers import configure_logger
@@ -92,6 +93,7 @@ def anomalib_subcommands() -> dict[str, dict[str, str]]:
             "train": {"description": "Fit the model and then call test on the trained model."},
             "predict": {"description": "Run inference on a model."},
             "export": {"description": "Export the model to ONNX or OpenVINO format."},
+            "pipeline": {"description": "Run a pipeline of jobs."},
         }
 
     def add_subcommands(self, **kwargs) -> None:
@@ -240,6 +242,10 @@ def add_export_arguments(self, parser: ArgumentParser) -> None:
         add_openvino_export_arguments(parser)
         self.add_arguments_to_parser(parser)
 
+    def add_pipeline_arguments(self, parser: ArgumentParser) -> None:
+        """Add pipeline arguments to the parser."""
+        add_pipeline_subparsers(parser)
+
     def _set_install_subcommand(self, action_subcommand: _ActionSubCommands) -> None:
         sub_parser = ArgumentParser(formatter_class=CustomHelpFormatter)
         sub_parser.add_argument(
@@ -288,7 +294,7 @@ def instantiate_classes(self) -> None:
             self.model = self._get(self.config_init, "model")
             self._configure_optimizers_method_to_model()
             self.instantiate_engine()
-        else:
+        elif self.config["subcommand"] != "pipeline":
             self.config_init = self.parser.instantiate_classes(self.config)
             subcommand = self.config["subcommand"]
             if subcommand in ("train", "export"):
@@ -353,6 +359,8 @@ def _run_subcommand(self) -> None:
             fn = getattr(self.engine, self.subcommand)
             fn_kwargs = self._prepare_subcommand_kwargs(self.subcommand)
             fn(**fn_kwargs)
+        elif self.subcommand == "pipeline":
+            run_pipeline(self.config)
         else:
             self.config_init = self.parser.instantiate_classes(self.config)
             getattr(self, f"{self.subcommand}")()

src/anomalib/cli/pipelines.py

@@ -0,0 +1,35 @@
+"""Subcommand for pipelines."""
+
+# Copyright (C) 2024 Intel Corporation
+# SPDX-License-Identifier: Apache-2.0
+
+from jsonargparse import ArgumentParser, Namespace
+
+from anomalib.utils.exceptions import try_import
+
+if try_import("anomalib.pipelines.orchestrators"):
+    from anomalib.pipelines.orchestrators import Benchmark, Orchestrator
+
+    PIPELINE_REGISTRY: dict[str, Orchestrator] | None = {
+        "benchmark": Benchmark(),
+    }
+else:
+    PIPELINE_REGISTRY = None
+
+
+def add_pipeline_subparsers(parser: ArgumentParser) -> None:
+    """Add subparsers for pipelines."""
+    if PIPELINE_REGISTRY is not None:
+        subcommands = parser.add_subcommands(dest="subcommand", help="Run Pipelines", required=True)
+        for name, pipeline in PIPELINE_REGISTRY.items():
+            subcommands.add_subcommand(name, pipeline.get_parser(), help=f"Run {name} pipeline")
+
+
+def run_pipeline(args: Namespace) -> None:
+    """Run pipeline."""
+    if PIPELINE_REGISTRY is not None:
+        config = args.pipeline[args.pipeline.subcommand]
+        PIPELINE_REGISTRY[args.pipeline.subcommand].run(config)
+    else:
+        msg = "Pipeline is not available"
+        raise ValueError(msg)

src/anomalib/data/__init__.py

@@ -3,7 +3,6 @@
 # Copyright (C) 2022-2024 Intel Corporation
 # SPDX-License-Identifier: Apache-2.0
 
-
 import importlib
 import logging
 from enum import Enum
@@ -29,20 +28,35 @@
 )
 
 
-def get_datamodule(config: DictConfig | ListConfig) -> AnomalibDataModule:
+class UnknownDatamoduleError(ModuleNotFoundError):
+    ...
+
+
+def get_datamodule(config: DictConfig | ListConfig | dict) -> AnomalibDataModule:
     """Get Anomaly Datamodule.
 
     Args:
-        config (DictConfig | ListConfig): Configuration of the anomaly model.
+        config (DictConfig | ListConfig | dict): Configuration of the anomaly model.
 
     Returns:
         PyTorch Lightning DataModule
     """
     logger.info("Loading the datamodule")
 
-    module = importlib.import_module(".".join(config.data.class_path.split(".")[:-1]))
-    dataclass = getattr(module, config.data.class_path.split(".")[-1])
-    init_args = {**config.data.get("init_args", {})}  # get dict
+    if isinstance(config, dict):
+        config = DictConfig(config)
+
+    try:
+        _config = config.data if "data" in config else config
+        if len(_config.class_path.split(".")) > 1:
+            module = importlib.import_module(".".join(_config.class_path.split(".")[:-1]))
+        else:
+            module = importlib.import_module("anomalib.data")
+    except ModuleNotFoundError as exception:
+        logger.exception(f"ModuleNotFoundError: {_config.class_path}")
+        raise UnknownDatamoduleError from exception
+    dataclass = getattr(module, _config.class_path.split(".")[-1])
+    init_args = {**_config.get("init_args", {})}  # get dict
     if "image_size" in init_args:
         init_args["image_size"] = to_tuple(init_args["image_size"])
 

src/anomalib/pipelines/__init__.py

@@ -0,0 +1,8 @@
+"""Pipelines for end-to-end usecases."""
+
+# Copyright (C) 2024 Intel Corporation
+# SPDX-License-Identifier: Apache-2.0
+
+from .runners import ParallelRunner, SerialRunner
+
+__all__ = ["ParallelRunner", "SerialRunner"]

src/anomalib/pipelines/jobs/__init__.py

@@ -0,0 +1,8 @@
+"""Pipeline jobs."""
+
+# Copyright (C) 2024 Intel Corporation
+# SPDX-License-Identifier: Apache-2.0
+
+from .benchmark import BenchmarkJob
+
+__all__ = ["BenchmarkJob"]

src/anomalib/pipelines/jobs/base.py

@@ -0,0 +1,64 @@
+"""Job from which all the jobs inherit from."""
+
+# Copyright (C) 2024 Intel Corporation
+# SPDX-License-Identifier: Apache-2.0
+
+import logging
+from abc import ABC, abstractmethod
+from collections.abc import Iterator
+
+from jsonargparse import ArgumentParser, Namespace
+
+from anomalib.pipelines.types import GATHERED_RESULTS, RUN_RESULTS
+
+
+class Job(ABC):
+    """A job is an atomic unit of work that can be run in parallel with other jobs."""
+
+    name: str
+
+    def __init__(self) -> None:
+        self.logger = logging.getLogger(self.name)
+
+    @abstractmethod
+    def run(self, task_id: int | None = None, **kwargs) -> RUN_RESULTS:
+        """A job is a single unit of work that can be run in parallel with other jobs.
+
+        ``task_id`` is optional and is only passed when the job is run in parallel.
+        """
+
+    @abstractmethod
+    def collect(self, results: list[RUN_RESULTS]) -> GATHERED_RESULTS:
+        """Gather the results returned from run.
+
+        This can be used to combine the results from multiple runs or to save/process individual job results.
+
+        Args:
+            results (list): List of results returned from run.
+        """
+
+    @abstractmethod
+    def save(self, results: GATHERED_RESULTS) -> None:
+        """Save the gathered results.
+
+        This can be used to save the results in a file or a database.
+
+        Args:
+            results: The gathered result returned from gather_results.
+        """
+
+    @staticmethod
+    @abstractmethod
+    def add_arguments(parser: ArgumentParser) -> None:
+        """Add arguments to the parser.
+
+        This can be used to add arguments that are specific to the job.
+        """
+
+    @staticmethod
+    @abstractmethod
+    def get_iterator(args: Namespace | None = None) -> Iterator:
+        """Return an iterator based on the arguments.
+
+        This can be used to generate the configurations that will be passed to run.
+        """

src/anomalib/pipelines/jobs/benchmark/__init__.py

@@ -0,0 +1,8 @@
+"""Benchmarking."""
+
+# Copyright (C) 2024 Intel Corporation
+# SPDX-License-Identifier: Apache-2.0
+
+from .benchmark import BenchmarkJob
+
+__all__ = ["BenchmarkJob"]

src/anomalib/pipelines/jobs/benchmark/benchmark.py

@@ -0,0 +1,152 @@
+"""Benchmarking job."""
+
+# Copyright (C) 2024 Intel Corporation
+# SPDX-License-Identifier: Apache-2.0
+
+from argparse import SUPPRESS
+from collections.abc import Iterator
+from pathlib import Path
+from tempfile import TemporaryDirectory
+from typing import Any
+
+import pandas as pd
+from jsonargparse import ArgumentParser, Namespace
+from jsonargparse._optionals import get_doc_short_description
+from lightning import seed_everything
+from rich.console import Console
+from rich.table import Table
+
+from anomalib.data import AnomalibDataModule, get_datamodule
+from anomalib.engine import Engine
+from anomalib.models import AnomalyModule, get_model
+from anomalib.pipelines.jobs.base import Job
+from anomalib.pipelines.utils import (
+    dict_from_namespace,
+    hide_output,
+)
+from anomalib.pipelines.utils.actions import GridSearchAction, get_iterator_from_grid_dict
+
+
+class BenchmarkJob(Job):
+    """Benchmarking job."""
+
+    name = "benchmark"
+
+    def __init__(self, accelerator: str) -> None:
+        super().__init__()
+        self.accelerator = accelerator
+
+    @hide_output
+    def run(
+        self,
+        model: AnomalyModule,
+        datamodule: AnomalibDataModule,
+        seed: int,
+        task_id: int | None = None,
+    ) -> dict[str, Any]:
+        """Run the benchmark."""
+        devices: str | list[int] = "auto"
+        if task_id is not None:
+            devices = [task_id]
+        with TemporaryDirectory() as temp_dir:
+            seed_everything(seed)
+            engine = Engine(
+                accelerator=self.accelerator,
+                devices=devices,
+                default_root_dir=temp_dir,
+            )
+            engine.fit(model, datamodule)
+            test_results = engine.test(model, datamodule)
+        output = {
+            "seed": seed,
+            "model": model.__class__.__name__,
+            "data": datamodule.__class__.__name__,
+            "category": datamodule.category,
+            **test_results[0],
+        }
+        self.logger.info(f"Completed with result {output}")
+        return output
+
+    def collect(self, results: list[dict[str, Any]]) -> pd.DataFrame:
+        """Gather the results returned from run."""
+        output: dict[str, Any] = {}
+        for key in results[0]:
+            output[key] = []
+        for result in results:
+            for key, value in result.items():
+                output[key].append(value)
+        return pd.DataFrame(output)
+
+    def save(self, result: pd.DataFrame) -> None:
+        """Save the result to a csv file."""
+        self._print_tabular_results(result)
+        file_path = Path("runs") / self.accelerator / self.name / "results.csv"
+        file_path.parent.mkdir(parents=True, exist_ok=True)
+        result.to_csv(file_path, index=False)
+        self.logger.info(f"Saved results to {file_path}")
+
+    def _print_tabular_results(self, gathered_result: pd.DataFrame) -> None:
+        """Print the tabular results."""
+        if gathered_result is not None:
+            console = Console()
+            table = Table(title=f"{self.name} Results", show_header=True, header_style="bold magenta")
+            _results = gathered_result.to_dict("list")
+            for column in _results:
+                table.add_column(column)
+            for row in zip(*_results.values(), strict=False):
+                table.add_row(*[str(value) for value in row])
+            console.print(table)
+
+    @staticmethod
+    def add_arguments(parser: ArgumentParser) -> None:
+        """Add job specific arguments to the parser."""
+        group = parser.add_argument_group("Benchmark job specific arguments.")
+        group.add_argument(
+            f"--{BenchmarkJob.name}.seed",
+            type=int | dict[str, list[int]],
+            default=42,
+            help="Seed for reproducibility.",
+        )
+        BenchmarkJob._add_subclass_arguments(group, AnomalyModule, f"{BenchmarkJob.name}.model")
+        BenchmarkJob._add_subclass_arguments(group, AnomalibDataModule, f"{BenchmarkJob.name}.data")
+
+    @staticmethod
+    def get_iterator(args: Namespace) -> Iterator:
+        """Return iterator based on the arguments."""
+        container = {
+            "seed": args.seed,
+            "data": dict_from_namespace(args.data),
+            "model": dict_from_namespace(args.model),
+        }
+        for _container in get_iterator_from_grid_dict(container):
+            yield {
+                "seed": _container["seed"],
+                "model": get_model(_container["model"]),
+                "datamodule": get_datamodule(_container["data"]),
+            }
+
+    @staticmethod
+    def _add_subclass_arguments(parser: ArgumentParser, baseclass: type, key: str) -> None:
+        """Adds the subclass of the provided class to the parser under nested_key."""
+        doc_group = get_doc_short_description(baseclass, logger=parser.logger)
+        group = parser._create_group_if_requested(  # noqa: SLF001
+            baseclass,
+            nested_key=key,
+            as_group=True,
+            doc_group=doc_group,
+            config_load=False,
+            instantiate=False,
+        )
+
+        with GridSearchAction.allow_default_instance_context():
+            action = group.add_argument(
+                f"--{key}",
+                metavar="CONFIG | CLASS_PATH_OR_NAME | .INIT_ARG_NAME VALUE",
+                help=(
+                    'One or more arguments specifying "class_path"'
+                    f' and "init_args" for any subclass of {baseclass.__name__}.'
+                ),
+                default=SUPPRESS,
+                action=GridSearchAction(typehint=baseclass, enable_path=True, logger=parser.logger),
+            )
+        action.sub_add_kwargs = {"fail_untyped": True, "sub_configs": True, "instantiate": True}

src/anomalib/pipelines/jobs/dummy_experiment/__init__.py

@@ -0,0 +1,7 @@
+"""Dummy experiment for design test."""
+
+from .compare import CompareJob
+from .extract import ExtractJob
+from .fit import FitJob
+
+__all__ = ["FitJob", "ExtractJob", "CompareJob"]