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    27 repositories

    • popkin

      Public
      R package to estimate kinship and FST from SNP data
      R
      •0•19•2•0•Updated Oct 2, 2024Oct 2, 2024

    • storeylab.github.io

      Public
      HTML
      •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • gcatest

      Public
      genotype conditional association test
      R
      •
      GNU General Public License v3.0
      •3•5•0•0•Updated Mar 6, 2024Mar 6, 2024

    • lfa

      Public
      logistic factor analysis
      R
      •
      GNU General Public License v3.0
      •8•15•1•0•Updated Mar 6, 2024Mar 6, 2024

    • qvalue

      Public
      R package to estimate q-values and false discovery rate quantities.
      R
      •36•109•5•2•Updated Sep 1, 2023Sep 1, 2023

    • bnpsd

      Public
      R package to model and simulate admixed populations
      R
      •
      GNU General Public License v3.0
      •0•8•0•0•Updated Jul 21, 2023Jul 21, 2023

    • superSeq-manuscript

      Public
      R
      •
      MIT License
      •0•2•0•0•Updated Jul 29, 2021Jul 29, 2021

    • fFDR

      Public
      Functional FDR package
      R
      •
      Other
      •1•5•6•0•Updated Mar 8, 2021Mar 8, 2021

    • terastructure

      Public
      TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer.
      C++
      •
      GNU General Public License v3.0
      •9•47•6•2•Updated Jan 1, 2020Jan 1, 2020

    • human-differentiation-manuscript

      Public
      Details on the data analysis for "New kinship and F_ST estimates reveal higher levels of differentiation in the global human population" by Ochoa and Storey
      q
      •
      MIT License
      •0•3•0•0•Updated Oct 17, 2019Oct 17, 2019

    • edge

      Public
      R package for identifying differentially expressed genes from genome-wide gene expression profiling studies.
      R
      •
      Other
      •9•21•2•1•Updated Jun 21, 2019Jun 21, 2019

    • sHWE-manuscript

      Public
      0•0•0•0•Updated May 28, 2019May 28, 2019

    • superSeq

      Public
      Assessing the increase in power from increasing read depth in a given RNA-Seq study
      R
      •
      MIT License
      •1•13•0•0•Updated May 13, 2019May 13, 2019

    • subSeq

      Public
      Subsampling of high-throughput sequencing count data
      R
      •
      MIT License
      •2•19•6•0•Updated May 10, 2019May 10, 2019

    • ALStructure-manuscript

      Public
      Data and code utilized in "A likelihood-free estimator of population structure bridging admixture models and principal components analysis", by Cabreros and Storey
      R
      •
      MIT License
      •0•1•0•0•Updated Apr 18, 2019Apr 18, 2019

    • odp_general_studies

      Public
      Reproducible analyses for "The optimal discovery procedure for significance analysis of general gene expression studies" by Bass and Storey
      TeX
      •1•0•0•0•Updated Mar 27, 2019Mar 27, 2019

    • biobroom

      Public
      Tidy up computational biology objects
      R
      •12•48•10•2•Updated Feb 1, 2019Feb 1, 2019

    • alstructure

      Public
      An R package that implements the ALStructure algorithm for estimating the admixture model of genetic population structure
      HTML
      •
      MIT License
      •2•9•3•0•Updated May 26, 2018May 26, 2018

    • reading

      Public
      A collection of papers and books that Storey Lab members should read and others may find useful
      13•47•0•0•Updated Oct 19, 2015Oct 19, 2015

    • trigger-devel

      Public
      R
      •0•0•0•0•Updated Oct 12, 2015Oct 12, 2015

    • gcat

      Public
      This package has been renamed gcatest: https://github.com/StoreyLab/gcatest
      R
      •0•3•0•0•Updated Oct 5, 2015Oct 5, 2015

    • dnamix

      Public
      DNAMIX is a computer program to calcluate likelihood ratios as they pertain to mixed DNA samples encountered in forensic science.
      Fortran
      •0•0•0•0•Updated Sep 10, 2015Sep 10, 2015

    • eigenR2

      Public
      TeX
      •0•0•0•0•Updated Jul 19, 2015Jul 19, 2015

    • qvalue-shiny

      Public
      a shiny website for the q-value package.
      R
      •2•0•1•0•Updated Apr 20, 2015Apr 20, 2015

    • sparta

      Public
      Dividing RNA-Seq reads based on their ancestral genotype
      Python
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Mar 21, 2015Mar 21, 2015

    • factorial-MA-RS

      Public
      Supplementary Materials for the manuscript "A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays" by Robinson, Wang, and Storey
      R
      •
      Other
      •1•1•0•0•Updated Feb 3, 2015Feb 3, 2015

    • BarNone

      Public
      Match barcodes in sequencing data based on Levenshtein distance
      C++
      •2•0•0•0•Updated Oct 3, 2014Oct 3, 2014