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5.2. Study Specification (STD)

Paulo Pinheiro edited this page Sep 6, 2019 · 7 revisions

5.2.1. When to use a Study

Study is the highest level concept in the infrastructure in the sense that every data belongs to one study. Studies are needed for any kind of data acquisition activity.

5.2.2. Study Elements

Study specifications identify study properties that are captured inside HADatAc's knowledge graph. An STD is a CSV file itself containing one data row (i.e., a record) composed of the following columns:

Column Header Column Description
Study ID abbreviated name of the study
Title full name of the study
Specific Aims
Significance
Number of Participants
Number of Samples
Institution
Principal Investigator
PI Address
PI City
PI State
PI Zip Code
Email
PI Phone
Co-PI 1 First
Co-PI 1 Last Name
Co-PI 1 Email
Co-PI 2 First
Co-PI 2 Last Name
Co-PI 2 Email
Contact First
Contact Last Name
Contact Email
Project Created Date
Project Last Updated Date
DC Access?

Data Owner Guide

  1. Installation
    1.1. Installing for Linux (Production)
    1.2. Installing for Linux (Development)
    1.3. Installing for MacOS (Development)
    1.4. Deploying with Docker (Production)
    1.5. Deploying with Docker (Development)
    1.6. Installing for Vagrant under Windows
    1.7. Upgrading
    1.8. Starting HADatAc
    1.9. Stopping HADatAc
  2. Setting Up
    2.1. Software Configuration
    2.2. Knowledge Graph Bootstrap
    2.2.1. Knowledge Graph
    2.2.2. Bootstrap without Labkey
    2.2.3. Bootstrap with Labkey
    2.3. Config Verification
  3. Using HADatAc
    3.1. Initial Page
    3.1.1. Home Button
    3.1.2. Sandbox Mode Button
    3.2. File Ingestion
    3.2.1. Ingesting Study Content
    3.2.2. Manual Submission of Files
    3.2.3. Automatic Submission of Files
    3.2.4. Data File Operations
    3.3. Manage Working Files 3.3.1. [Create Empty Semantic File from Template]
    3.3.2. SDD Editor
    3.3.3. DD Editor
    3.4. Manage Metadata
    3.4.1. Manage Instrument Infrastructure
    3.4.2. Manage Deployments 3.4.3. Manage Studies
    3.4.4. [Manage Object Collections]
    3.4.5. Manage Streams
    3.4.6. Manage Semantic Data Dictionaries
    3.4.7. Manage Indicators
    3.5. Data Search
    3.5.1. Data Faceted Search
    3.5.2. Data Spatial Search
    3.6. Metadata Browser and Search
    3.7. Knowledge Graph Browser
    3.8. API
    3.9. Data Download
  4. Software Architecture
    4.1. Software Components
    4.2. The Human-Aware Science Ontology (HAScO)
  5. Metadata Files
    5.1. Deployment Specification (DPL)
    5.2. Study Specification (STD)
    5.3. Semantic Study Design (SSD)
    5.4. Semantic Data Dictionary (SDD)
    5.5. Stream Specification (STR)
  6. Content Evolution
    6.1. Namespace List Update
    6.2. Ontology Update
    6.3. [DPL Update]
    6.4. [SSD Update]
    6.5. SDD Update
  7. Data Governance
    7.1. Access Network
    7.2. User Status, Categories and Access Permissions
    7.3. Data and Metadata Privacy
  8. HADatAc-Supported Projects
  9. Derived Products and Technologies
  10. Glossary
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