base_suite on latest master (1cddc84) has multiple failures #38

phil-blain · 2021-04-21T21:39:55Z

$ ./results.csh |grep FAIL | grep ' run'
FAIL daley_intel_restart_gx1_40x4_droundrobin_medium run
FAIL daley_intel_restart_gx3_6x2_alt01_debug_short run
FAIL daley_intel_restart_gx3_8x2_alt02_debug_short run
FAIL daley_intel_restart_gx3_4x2_alt03_debug_short run
FAIL daley_intel_smoke_gx3_4x4_alt04_debug_short run -1 -1 -1
FAIL daley_intel_smoke_gx3_10x2_debug_diag1_gx3sep2_run5day run -1 -1 -1
FAIL daley_intel_restart_gbox128_4x2_boxdyn_debug_short run
FAIL daley_intel_smoke_gbox128_2x2_boxadv_debug_short run -1 -1 -1
FAIL daley_intel_smoke_gbox128_4x4_boxrestore_debug_short run -1 -1 -1
FAIL daley_intel_smoke_gx3_8x2_bgcz_debug run -1 -1 -1
FAIL daley_intel_smoke_gx3_8x1_bgcskl_debug run -1 -1 -1
FAIL daley_intel_smoke_gx1_24x1_medium_run90day_yi2008 run -1 -1 -1
FAIL daley_intel_restart_gx1_24x1_short run
FAIL daley_intel_restart_gx1_16x2_debug_gx1apr_medium_seabedLKD run
FAIL daley_intel_restart_gx1_15x2_medium_seabedprob run
FAIL daley_intel_restart_gx1_32x1_gx1prod_medium run
FAIL daley_intel_smoke_gx3_4x2_debug_diag24_fsd1_run5day run -1 -1 -1
FAIL daley_intel_restart_gx3_4x2_debug_fsd12_short run
FAIL daley_intel_smoke_gx3_4x1_debug_isotope run -1 -1 -1
FAIL daley_intel_smoke_gx3_8x2_debug_diag24_run5day_zsal run -1 -1 -1

phil-blain · 2021-04-21T21:45:00Z

daley_intel_restart_gx1_40x4_droundrobin_medium

il manque la nouvelle condition initiale (v6)

daley_intel_restart_gx3_6x2_alt01_debug_short

 (calc_timesteps) modified npt from        10 d with dt=       3600.00
 (calc_timesteps)                to       240 1 with dt=       3600.00
 (calc_timesteps) start time is  2005-01-01:00000
 (calc_timesteps)   end time is  2005-01-11:00000

forrtl: error (65): floating invalid
Image              PC                Routine            Line        Source
cice               00000000022DF5E4  Unknown               Unknown  Unknown
cice               0000000001B73480  Unknown               Unknown  Unknown
cice               00000000012B5FEF  ice_init_column_m         433  ice_init_column.F90
cice               0000000000403821  cice_initmod_mp_c         220  CICE_InitMod.F90
cice               0000000000401EB3  cice_initmod_mp_c          52  CICE_InitMod.F90
cice               000000000040168B  MAIN__                     43  CICE.F90
cice               00000000004015F2  Unknown               Unknown  Unknown
cice               00000000023C014F  Unknown               Unknown  Unknown
cice               00000000004014DA  Unknown               Unknown  Unknown

array apeffn is used but is not initialized if shortwave= 'ccsm3'

daley_intel_restart_gx3_8x2_alt02_debug_short

 (calc_timesteps)   end time is  2005-01-11:00000

  Initial forcing data year =         2005
  Final   forcing data year =         2005

 Atmospheric data files:
 /home/ords/cmdd/cmde/sice500//CICE_data/forcing/gx3/JRA55/8XDAILY/JRA55_gx3_03hr_forcing_2005.nc
  Set current forcing data year =         2005
 (JRA55_data) reading forcing file 1st ts = /home/ords/cmdd/cmde/sice500//CICE_data/forcing/gx3/JRA55/8XDAILY/JRA55_gx3_03hr_forcing_2005.nc
forrtl: error (65): floating invalid
Image              PC                Routine            Line        Source
cice               00000000022DF5E4  Unknown               Unknown  Unknown
cice               0000000001B73480  Unknown               Unknown  Unknown
cice               00000000012B4306  ice_init_column_m         429  ice_init_column.F90
cice               0000000000403821  cice_initmod_mp_c         220  CICE_InitMod.F90
cice               0000000000401EB3  cice_initmod_mp_c          52  CICE_InitMod.F90
cice               000000000040168B  MAIN__                     43  CICE.F90
cice               00000000004015F2  Unknown               Unknown  Unknown
cice               00000000023C014F  Unknown               Unknown  Unknown
cice               00000000004014DA  Unknown               Unknown  Unknown

array albpndn is used but is not initialized if shortwave= 'ccsm3'

daley_intel_restart_gx3_4x2_alt03_debug_short

same backtrace as above but at line 425
array albicen is used but is not initialized if calc_Tsfc = .false.

phil-blain · 2021-04-21T21:56:48Z

daley_intel_smoke_gx3_4x4_alt04_debug_short.base-20210421, daley_intel_smoke_gx3_4x1_debug_isotope

 /home/ords/cmdd/cmde/sice500//CICE_data/forcing/gx3/JRA55/8XDAILY/JRA55_gx3_03hr_forcing_2005.nc
  Set current forcing data year =         2005
 (JRA55_data) reading forcing file 1st ts = /home/ords/cmdd/cmde/sice500//CICE_data/forcing/gx3/JRA55/8XDAILY/JRA55_gx3_03hr_forcing_2005.nc
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
*** longjmp causes uninitialized stack frame ***: ./cice terminated
forrtl: error (65): floating invalid
Image              PC                Routine            Line        Source
cice               00000000022DF5E4  Unknown               Unknown  Unknown
cice               0000000001B73480  Unknown               Unknown  Unknown
cice               00000000011E60C6  ice_history_share         908  ice_history_shared.F90
cice               00000000010B61D9  ice_history_bgc_m        2343  ice_history_bgc.F90
cice               0000000000F8E089  ice_history_mp_ac        3035  ice_history.F90
cice               000000000204E5E3  Unknown               Unknown  Unknown
cice               0000000001FF888A  Unknown               Unknown  Unknown
cice               0000000001FF78E1  Unknown               Unknown  Unknown
cice               000000000204E9CA  Unknown               Unknown  Unknown
cice               00000000020E25A9  Unknown               Unknown  Unknown

In GDB:

(gdb) bt
#0  raise (sig=...) at ../sysdeps/unix/sysv/linux/raise.c:51
#1  0x00000000023c7631 in abort () at abort.c:79
#2  0x00000000022df641 in for.signal_handler ()
#3  <signal handler called>
#4  0x00000000011e60c6 in ice_history_shared::accum_hist_field_2d (id=..., iblk=..., field_accum=..., field=...)
    at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/analysis/ice_history_shared.F90:908
#5  0x00000000010b61d9 in ice_history_bgc::accum_hist_bgc (iblk=...) at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/analysis/ice_history_bgc.F90:2343
#6  0x0000000000f8e089 in ice_history::L_ice_history_mp_accum_hist__1878__par_loop0_2_9 () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/analysis/ice_history.F90:3035
#7  0x000000000204e5e3 in __kmp_invoke_microtask ()
#8  0x0000000001ff888a in __kmp_invoke_task_func ()
#9  0x0000000001ff78e1 in __kmp_launch_thread ()
#10 0x000000000204e9ca in _INTERNAL_26_______src_z_Linux_util_cpp_fb37008b::__kmp_launch_worker(void*) ()
#11 0x00000000020e25a9 in start_thread (arg=...) at pthread_create.c:465
#12 0x000000000243556f in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:95

In DDT:

#9 icemodel () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE.F90:43 (at 0x000000000040168b)
#8 cice_initmod::cice_initialize () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE_InitMod.F90:52 (at 0x0000000000401eb3)
#7 cice_initmod::cice_init () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE_InitMod.F90:225 (at 0x0000000000403842)
#6 ice_history::accum_hist (dt=3600) at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/analysis/ice_history.F90:1878 (at 0x0000000000eb6d2d)
#5 __kmpc_fork_call () (at 0x0000000001fc5885)
#4 __kmp_fork_call () (at 0x0000000001ffa136)
#3 __kmp_invoke_task_func () (at 0x0000000001ff888a)
#2 __kmp_invoke_microtask () (at 0x000000000204e5e3)
#1 ice_history::L_ice_history_mp_accum_hist__1878__par_loop0_2_9 () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/analysis/ice_history.F90:3035 (at 0x0000000000f8e089)
#0 ice_history_bgc::accum_hist_bgc (iblk=1) at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/analysis/ice_history_bgc.F90:2344 (at 0x00000000010b5e56)

field_accum is all NaN (which is PP_net one frame above). Same for grow_net, upNO, upNH. Looks like the first two are initialized in init_history_bgc, called by ice_step, so not yet initialized when we write the initial condition.

daley_intel_smoke_gx3_8x2_bgcz_debug, daley_intel_smoke_gx3_8x1_bgcskl_debug

idem for ocean_bio

phil-blain · 2021-04-21T21:57:59Z

daley_intel_smoke_gx3_10x2_debug_diag1_gx3sep2_run5day

il manque /home/ords/cmdd/cmde/sice500//CICE_data/ic/gx3/iced_gx3_v6.2005-09-01.nc

phil-blain · 2021-04-22T19:03:33Z

daley_intel_restart_gbox128_4x2_boxdyn_debug_short, daley_intel_smoke_gbox128_2x2_boxadv_debug_short, daley_intel_smoke_gbox128_4x4_boxrestore_debug_short

#4  0x0000000000e62b68 in ice_grid::gridbox_corners () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/infrastructure/ice_grid.F90:2209
#5  0x0000000000dec5af in ice_grid::init_grid2 () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/infrastructure/ice_grid.F90:560
#6  0x000000000040206f in cice_initmod::cice_init () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE_InitMod.F90:121
#7  0x0000000000401eb3 in cice_initmod::cice_initialize () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE_InitMod.F90:52
#8  0x000000000040168b in icemodel () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE.F90:43

lont_bounds is all NaN

phil-blain · 2021-04-22T19:24:33Z

daley_intel_smoke_gx3_4x2_debug_diag24_fsd1_run5day, daley_intel_restart_gx3_4x2_debug_fsd12_short

#4  0x00000000011969ad in ice_history_fsd::accum_hist_fsd (iblk=...) at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/analysis/ice_history_fsd.F90:404
#5  0x0000000000f8e0a7 in ice_history::L_ice_history_mp_accum_hist__1878__par_loop0_2_9 () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/analysis/ice_history.F90:3041
#6  0x000000000204e5e3 in __kmp_invoke_microtask ()
#7  0x0000000001ff888a in __kmp_invoke_task_func ()
#8  0x0000000001ffa136 in __kmp_fork_call ()
#9  0x0000000001fc5885 in __kmpc_fork_call ()
#10 0x0000000000eb6d2d in ice_history::accum_hist (dt=...) at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/analysis/ice_history.F90:1878
#11 0x0000000000403842 in cice_initmod::cice_init () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE_InitMod.F90:225
#12 0x0000000000401eb3 in cice_initmod::cice_initialize () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE_InitMod.F90:52
#13 0x000000000040168b in icemodel () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE.F90:43

aicen_init is not initialized. (initialized in save_init called in ice_step).

phil-blain · 2021-04-22T19:34:18Z

daley_intel_smoke_gx3_8x2_debug_diag24_run5day_zsal

#4  0x0000000001b71f7a in icepack_zsalinity::merge_zsal_fluxes (aicens=..., zsal_totn=..., zsal_tot=..., fzsal=..., fzsaln=..., fzsal_g=..., fzsaln_g=...)
    at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/icepack/columnphysics/icepack_zsalinity.F90:1107
#5  0x0000000001b4c1e8 in icepack_zsalinity::zsalinity (n_cat=..., dt=..., nilyr=..., bgrid=..., cgrid=..., igrid=..., trcrn_s=..., trcrn_q=..., trcrn_si=..., ntrcr=..., fbri=..., bsin=..., 
    btin=..., bphin=..., iphin=..., ikin=..., hbr_old=..., hbrin=..., hin=..., hin_old=..., idin=..., darcy_v=..., brine_sal=..., brine_rho=..., ibrine_sal=..., ibrine_rho=..., 
    dh_direct=..., rayleigh_criteria=..., first_ice=..., sss=..., sst=..., dh_top=..., dh_bot=..., fzsal=..., fzsal_g=..., bphi_min=..., nblyr=..., vicen=..., aicen=..., zsal_tot=...)
    at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/icepack/columnphysics/icepack_zsalinity.F90:177
#6  0x0000000001b26b6e in icepack_zbgc::icepack_biogeochemistry (dt=..., ntrcr=..., nbtrcr=..., upno=..., upnh=..., idi=..., iki=..., zfswin=..., zsal_tot=..., darcy_v=..., grow_net=..., 
    pp_net=..., hbri=..., dhbr_bot=..., dhbr_top=..., zoo=..., fbio_snoice=..., fbio_atmice=..., ocean_bio=..., first_ice=..., fswpenln=..., bphi=..., btiz=..., ice_bio_net=..., 
    snow_bio_net=..., fswthrun=..., rayleigh_criteria=..., sice_rho=..., fzsal=..., fzsal_g=..., bgrid=..., igrid=..., icgrid=..., cgrid=..., nblyr=..., nilyr=..., nslyr=..., n_algae=..., 
    n_zaero=..., ncat=..., n_doc=..., n_dic=..., n_don=..., n_fed=..., n_fep=..., meltbn=..., melttn=..., congeln=..., snoicen=..., sst=..., sss=..., fsnow=..., meltsn=..., hin_old=..., 
    flux_bio=..., flux_bio_atm=..., aicen_init=..., vicen_init=..., aicen=..., vicen=..., vsnon=..., aice0=..., trcrn=..., vsnon_init=..., skl_bgc=...)
    at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/icepack/columnphysics/icepack_zbgc.F90:1060
#7  0x00000000015e5055 in ice_step_mod::biogeochemistry (dt=..., iblk=...) at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/cicedynB/general/ice_step_mod.F90:1467
#8  0x000000000040e907 in cice_runmod::L_cice_runmod_mp_ice_step__211__par_loop0_2_2 () at /fs/homeu1/eccc/cmd/cmde/phb001/code/cice/cicecore/drivers/standalone/cice/CICE_RunMod.F90:227

zsal_tot is NaN.

phil-blain · 2021-04-22T21:00:55Z

Reported upstream: https://github.com/CICE-Consortium/CICE/issues/599

* merge latest master (#4) * Isotopes for CICE (CICE-Consortium#423) Co-authored-by: apcraig <anthony.p.craig@gmail.com> Co-authored-by: David Bailey <dbailey@ucar.edu> Co-authored-by: Elizabeth Hunke <eclare@lanl.gov> * updated orbital calculations needed for cesm * fixed problems in updated orbital calculations needed for cesm * update CICE6 to support coupling with UFS * put in changes so that both ufsatm and cesm requirements for potential temperature and density are satisfied * Convergence on ustar for CICE. (CICE-Consortium#452) (#5) * Add atmiter_conv to CICE * Add documentation * trigger build the docs Co-authored-by: David A. Bailey <dbailey@ucar.edu> * update icepack submodule * Revert "update icepack submodule" This reverts commit e70d1ab. * update comp_ice.backend with temporary ice_timers fix * Fix threading problem in init_bgc * Fix additional OMP problems * changes for coldstart running * Move the forapps directory * remove cesmcoupled ifdefs * Fix logging issues for NUOPC * removal of many cpp-ifdefs * fix compile errors * fixes to get cesm working * fixed white space issue * Add restart_coszen namelist option * update icepack submodule * change Orion to orion in backend remove duplicate print lines from ice_transport_driver * add -link_mpi=dbg to debug flags (#8) * cice6 compile (#6) * enable debug build. fix to remove errors * fix an error in comp_ice.backend.libcice * change Orion to orion for machine identification * changes for consistency w/ current emc-cice5 (#13) Update to emc/develop fork to current CICE consortium Co-authored-by: David A. Bailey <dbailey@ucar.edu> Co-authored-by: Tony Craig <apcraig@users.noreply.github.com> Co-authored-by: Elizabeth Hunke <eclare@lanl.gov> Co-authored-by: Mariana Vertenstein <mvertens@ucar.edu> Co-authored-by: apcraig <anthony.p.craig@gmail.com> Co-authored-by: Philippe Blain <levraiphilippeblain@gmail.com> * Fixcommit (#14) Align commit history between emc/develop and cice-consortium/master * Update CICE6 for integration to S2S * add wcoss_dell_p3 compiler macro * update to icepack w/ debug fix * replace SITE with MACHINE_ID * update compile scripts * Support TACC stampede (#19) * update icepack * add ice_dyn_vp module to CICE_InitMod * update gitmodules, update icepack * Update CICE to consortium master (#23) updates include: * deprecate upwind advection (CICE-Consortium#508) * add implicit VP solver (CICE-Consortium#491) * update icepack * switch icepack branches * update to icepack master but set abort flag in ITD routine to false * update icepack * Update CICE to latest Consortium master (#26) update CICE and Icepack * changes the criteria for aborting ice for thermo-conservation errors * updates the time manager * fixes two bugs in ice_therm_mushy * updates Icepack to Consortium master w/ flip of abort flag for troublesome IC cases * add cice changes for zlvs (#29) * update icepack and pointer * update icepack and revert gitmodules * Fix history features - Fix bug in history time axis when sec_init is not zero. - Fix issue with time_beg and time_end uninitialized values. - Add support for averaging with histfreq='1' by allowing histfreq_n to be any value in that case. Extend and clean up construct_filename for history files. More could be done, but wanted to preserve backwards compatibility. - Add new calendar_sec2hms to converts daily seconds to hh:mm:ss. Update the calchk calendar unit tester to check this method - Remove abort test in bcstchk, this was just causing problems in regression testing - Remove known problems documentation about problems writing when istep=1. This issue does not exist anymore with the updated time manager. - Add new tests with hist_avg = false. Add set_nml.histinst. * revert set_nml.histall * fix implementation error * update model log output in ice_init * Fix QC issues - Add netcdf ststus checks and aborts in ice_read_write.F90 - Check for end of file when reading records in ice_read_write.F90 for ice_read_nc methods - Update set_nml.qc to better specify the test, turn off leap years since we're cycling 2005 data - Add check in c ice.t-test.py to make sure there is at least 1825 files, 5 years of data - Add QC run to base_suite.ts to verify qc runs to completion and possibility to use those results directly for QC validation - Clean up error messages and some indentation in ice_read_write.F90 * Update testing - Add prod suite including 10 year gx1prod and qc test - Update unit test compare scripts * update documentation * reset calchk to 100000 years * update evp1d test * update icepack * update icepack * add memory profiling (#36) * add profile_memory calls to CICE cap * update icepack * fix rhoa when lowest_temp is 0.0 * provide default value for rhoa when imported temp_height_lowest (Tair) is 0.0 * resolves seg fault when frac_grid=false and do_ca=true * update icepack submodule * Update CICE for latest Consortium master (#38) * Implement advanced snow physics in icepack and CICE * Fix time-stamping of CICE history files * Fix CICE history file precision * Use CICE-Consortium/Icepack master (#40) * switch to icepack master at consortium * recreate cap update branch (#42) * add debug_model feature * add required variables and calls for tr_snow * remove 2 extraneous lines * remove two log print lines that were removed prior to merge of driver updates to consortium * duplicate gitmodule style for icepack * Update CICE to latest Consortium/main (#45) * Update CICE to Consortium/main (CICE-Consortium#48) Update OpenMP directives as needed including validation via new omp_suite. Fixed OpenMP in dynamics. Refactored eap puny/pi lookups to improve scalar performance Update Tsfc implementation to make sure land blocks don't set Tsfc to freezing temp Update for sea bed stress calculations * fix comment, fix env for orion and hera * replace save_init with step_prep in CICE_RunMod * fixes for cgrid repro * remove added haloupdates * baselines pass with these extra halo updates removed * change F->S for ocean velocities and tilts * fix debug failure when grid_ice=C * compiling in debug mode using -init=snan,arrays requires initialization of variables * respond to review comments * remove inserted whitespace for uvelE,N and vvelE,N * Add wave-cice coupling; update to Consortium main (CICE-Consortium#51) * add wave-ice fields * initialize aicen_init, which turns up as NaN in calc of floediam export * add call to icepack_init_wave to initialize wavefreq and dwavefreq * update to latest consortium main (PR 752) * add initializationsin ice_state * initialize vsnon/vsnon_init and vicen/vicen_init Co-authored-by: apcraig <anthony.p.craig@gmail.com> Co-authored-by: David Bailey <dbailey@ucar.edu> Co-authored-by: Elizabeth Hunke <eclare@lanl.gov> Co-authored-by: Mariana Vertenstein <mvertens@ucar.edu> Co-authored-by: Minsuk Ji <57227195+MinsukJi-NOAA@users.noreply.github.com> Co-authored-by: Tony Craig <apcraig@users.noreply.github.com> Co-authored-by: Philippe Blain <levraiphilippeblain@gmail.com>

…ICE-Consortium#856) * merge latest master (#4) * Isotopes for CICE (CICE-Consortium#423) Co-authored-by: apcraig <anthony.p.craig@gmail.com> Co-authored-by: David Bailey <dbailey@ucar.edu> Co-authored-by: Elizabeth Hunke <eclare@lanl.gov> * updated orbital calculations needed for cesm * fixed problems in updated orbital calculations needed for cesm * update CICE6 to support coupling with UFS * put in changes so that both ufsatm and cesm requirements for potential temperature and density are satisfied * Convergence on ustar for CICE. (CICE-Consortium#452) (#5) * Add atmiter_conv to CICE * Add documentation * trigger build the docs Co-authored-by: David A. Bailey <dbailey@ucar.edu> * update icepack submodule * Revert "update icepack submodule" This reverts commit e70d1ab. * update comp_ice.backend with temporary ice_timers fix * Fix threading problem in init_bgc * Fix additional OMP problems * changes for coldstart running * Move the forapps directory * remove cesmcoupled ifdefs * Fix logging issues for NUOPC * removal of many cpp-ifdefs * fix compile errors * fixes to get cesm working * fixed white space issue * Add restart_coszen namelist option * update icepack submodule * change Orion to orion in backend remove duplicate print lines from ice_transport_driver * add -link_mpi=dbg to debug flags (#8) * cice6 compile (#6) * enable debug build. fix to remove errors * fix an error in comp_ice.backend.libcice * change Orion to orion for machine identification * changes for consistency w/ current emc-cice5 (#13) Update to emc/develop fork to current CICE consortium Co-authored-by: David A. Bailey <dbailey@ucar.edu> Co-authored-by: Tony Craig <apcraig@users.noreply.github.com> Co-authored-by: Elizabeth Hunke <eclare@lanl.gov> Co-authored-by: Mariana Vertenstein <mvertens@ucar.edu> Co-authored-by: apcraig <anthony.p.craig@gmail.com> Co-authored-by: Philippe Blain <levraiphilippeblain@gmail.com> * Fixcommit (#14) Align commit history between emc/develop and cice-consortium/master * Update CICE6 for integration to S2S * add wcoss_dell_p3 compiler macro * update to icepack w/ debug fix * replace SITE with MACHINE_ID * update compile scripts * Support TACC stampede (#19) * update icepack * add ice_dyn_vp module to CICE_InitMod * update gitmodules, update icepack * Update CICE to consortium master (#23) updates include: * deprecate upwind advection (CICE-Consortium#508) * add implicit VP solver (CICE-Consortium#491) * update icepack * switch icepack branches * update to icepack master but set abort flag in ITD routine to false * update icepack * Update CICE to latest Consortium master (#26) update CICE and Icepack * changes the criteria for aborting ice for thermo-conservation errors * updates the time manager * fixes two bugs in ice_therm_mushy * updates Icepack to Consortium master w/ flip of abort flag for troublesome IC cases * add cice changes for zlvs (#29) * update icepack and pointer * update icepack and revert gitmodules * Fix history features - Fix bug in history time axis when sec_init is not zero. - Fix issue with time_beg and time_end uninitialized values. - Add support for averaging with histfreq='1' by allowing histfreq_n to be any value in that case. Extend and clean up construct_filename for history files. More could be done, but wanted to preserve backwards compatibility. - Add new calendar_sec2hms to converts daily seconds to hh:mm:ss. Update the calchk calendar unit tester to check this method - Remove abort test in bcstchk, this was just causing problems in regression testing - Remove known problems documentation about problems writing when istep=1. This issue does not exist anymore with the updated time manager. - Add new tests with hist_avg = false. Add set_nml.histinst. * revert set_nml.histall * fix implementation error * update model log output in ice_init * Fix QC issues - Add netcdf ststus checks and aborts in ice_read_write.F90 - Check for end of file when reading records in ice_read_write.F90 for ice_read_nc methods - Update set_nml.qc to better specify the test, turn off leap years since we're cycling 2005 data - Add check in c ice.t-test.py to make sure there is at least 1825 files, 5 years of data - Add QC run to base_suite.ts to verify qc runs to completion and possibility to use those results directly for QC validation - Clean up error messages and some indentation in ice_read_write.F90 * Update testing - Add prod suite including 10 year gx1prod and qc test - Update unit test compare scripts * update documentation * reset calchk to 100000 years * update evp1d test * update icepack * update icepack * add memory profiling (#36) * add profile_memory calls to CICE cap * update icepack * fix rhoa when lowest_temp is 0.0 * provide default value for rhoa when imported temp_height_lowest (Tair) is 0.0 * resolves seg fault when frac_grid=false and do_ca=true * update icepack submodule * Update CICE for latest Consortium master (#38) * Implement advanced snow physics in icepack and CICE * Fix time-stamping of CICE history files * Fix CICE history file precision * Use CICE-Consortium/Icepack master (#40) * switch to icepack master at consortium * recreate cap update branch (#42) * add debug_model feature * add required variables and calls for tr_snow * remove 2 extraneous lines * remove two log print lines that were removed prior to merge of driver updates to consortium * duplicate gitmodule style for icepack * Update CICE to latest Consortium/main (#45) * Update CICE to Consortium/main (CICE-Consortium#48) Update OpenMP directives as needed including validation via new omp_suite. Fixed OpenMP in dynamics. Refactored eap puny/pi lookups to improve scalar performance Update Tsfc implementation to make sure land blocks don't set Tsfc to freezing temp Update for sea bed stress calculations * fix comment, fix env for orion and hera * replace save_init with step_prep in CICE_RunMod * fixes for cgrid repro * remove added haloupdates * baselines pass with these extra halo updates removed * change F->S for ocean velocities and tilts * fix debug failure when grid_ice=C * compiling in debug mode using -init=snan,arrays requires initialization of variables * respond to review comments * remove inserted whitespace for uvelE,N and vvelE,N * Add wave-cice coupling; update to Consortium main (CICE-Consortium#51) * add wave-ice fields * initialize aicen_init, which turns up as NaN in calc of floediam export * add call to icepack_init_wave to initialize wavefreq and dwavefreq * update to latest consortium main (PR 752) * add initializationsin ice_state * initialize vsnon/vsnon_init and vicen/vicen_init * Update CICE (CICE-Consortium#54) * update to include recent PRs to Consortium/main * fix for nudiag_set allow nudiag_set to be available outside of cesm; may prefer to fix in coupling interface * Update CICE for latest Consortium/main (CICE-Consortium#56) * add run time info * change real(8) to real(dbl)kind) * fix syntax * fix write unit * use cice_wrapper for ufs timer functionality * add elapsed model time for logtime * tidy up the wrapper * fix case for 'time since' at the first advance * add timer and forecast log * write timer values to timer log, not nu_diag * write log.ice.fXXX * only one time is needed * modify message written for log.ice.fXXX * change info in fXXX log file * Update CICE from Consortium/main (CICE-Consortium#62) * Fix CESMCOUPLED compile issue in icepack. (CICE-Consortium#823) * Update global reduction implementation to improve performance, fix VP bug (CICE-Consortium#824) * Update VP global sum to exclude local implementation with tripole grids * Add functionality to change hist_avg for each stream (CICE-Consortium#827) * Update Icepack to #6703bc533c968 May 22, 2023 (CICE-Consortium#829) * Fix for mesh check in CESM driver (CICE-Consortium#830) * Namelist option for time axis position. (CICE-Consortium#839) * reset timer after Advance to retrieve "wait time" * add logical control for enabling runtime info * remove zsal items from cap * fix typo --------- Co-authored-by: apcraig <anthony.p.craig@gmail.com> Co-authored-by: David Bailey <dbailey@ucar.edu> Co-authored-by: Elizabeth Hunke <eclare@lanl.gov> Co-authored-by: Mariana Vertenstein <mvertens@ucar.edu> Co-authored-by: Minsuk Ji <57227195+MinsukJi-NOAA@users.noreply.github.com> Co-authored-by: Tony Craig <apcraig@users.noreply.github.com> Co-authored-by: Philippe Blain <levraiphilippeblain@gmail.com> Co-authored-by: Jun.Wang <Jun.Wang@noaa.gov>

phil-blain changed the title ~~Latest master~~ Latest master ( Apr 21, 2021

phil-blain changed the title ~~Latest master (~~ base_suite on latest master (1cddc84) has multiple failures Apr 21, 2021

phil-blain closed this as completed May 6, 2021

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base_suite on latest master (1cddc84) has multiple failures #38

base_suite on latest master (1cddc84) has multiple failures #38

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base_suite on latest master (1cddc84) has multiple failures #38

base_suite on latest master (1cddc84) has multiple failures #38

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