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stream_v0.4.0

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@huidongchen huidongchen released this 26 Nov 05:47
· 154 commits to master since this release
  • optimize marker gene detection
  • add function set_workdir()
  • add new parameters for command line
  • add function add_metadata()
  • add support of color range setting for gene plots
  • add axis labels for UMAP and tSNE plots
  • support removal of figure legends
  • add auto detection of branching event for structure adjustment and plotting
  • add the support of se for mapping
  • add n_neighbors; nb_pct is deprecated
  • change default dimension reduction to se;
  • change default number of jobs to 1;
  • change default value of loess_frac,min_num_cells,min_num_genes