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Add API page to readthedocs #188

Add API page to readthedocs

Add API page to readthedocs #188

Workflow file for this run

name: CI
on: [push, pull_request]
jobs:
build-linux:
runs-on: ubuntu-20.04
strategy:
max-parallel: 5
matrix:
python-version: [3.6, 3.7, 3.8, 3.9]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
run: |
conda config --add channels bioconda
conda config --add channels conda-forge
# conda env update --file environment.yml --name base
python -m pip install --upgrade pip
pip install -r requirements.txt
pip install -e .
- name: Lint with flake8
run: |
conda install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,E501,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
conda install pytest
pytest