Add automatic logging

breaking-dam-2d/fluid-openfoam/run.sh

@@ -1,10 +1,13 @@
 #!/bin/sh
 set -e -u
 
-cp 0/alpha.water_orig 0/alpha.water
-blockMesh
-setFields
-touch fluid-openfoam.foam
+. ../../tools/log.sh
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log cp 0/alpha.water_orig 0/alpha.water
+log blockMesh
+log setFields
+
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

breaking-dam-2d/solid-calculix/run.sh

@@ -1,4 +1,8 @@
 #!/bin/sh
 set -e -u
 
-ccx_preCICE -i flap -precice-participant Solid
+. ../../tools/log.sh
+
+log ccx_preCICE -i flap -precice-participant Solid
+
+close_log

channel-transport-reaction/chemical-fenics/run.sh

@@ -1,4 +1,8 @@
 #!/bin/sh
 set -e -u
 
-python3 chemical-reaction-advection-diffusion.py
+. ../../tools/log.sh
+
+log python3 chemical-reaction-advection-diffusion.py
+
+close_log

channel-transport-reaction/clean-tutorial.sh

@@ -0,0 +1,11 @@
+#!/bin/sh
+set -e -u
+
+# shellcheck disable=SC1091
+. ../tools/cleaning-tools.sh
+
+clean_tutorial .
+clean_precice_logs .
+rm -fv ./*.log
+rm -fv ./*.vtu
+

channel-transport-reaction/fluid-fenics/run.sh

@@ -1,4 +1,8 @@
 #!/bin/sh
 set -e -u
 
-python3 fluid.py
+. ../../tools/log.sh
+
+log python3 fluid.py
+
+close_log

channel-transport/fluid-nutils/run.sh

@@ -1,7 +1,11 @@
 #!/bin/sh
 set -e -u
 
-python3 -m venv .venv
-. .venv/bin/activate
-pip install -r requirements.txt
-python3 fluid.py
+. ../../tools/log.sh
+
+log python3 -m venv .venv
+log . .venv/bin/activate
+log pip install -r requirements.txt
+log python3 fluid.py
+
+close_log

channel-transport/fluid-openfoam/run.sh

@@ -1,8 +1,11 @@
 #!/bin/sh
 set -e -u
 
-blockMesh
-touch fluid-openfoam.foam
+. ../../tools/log.sh
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log blockMesh
+
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

channel-transport/transport-nutils/run.sh

@@ -1,7 +1,11 @@
 #!/bin/sh
 set -e -u
 
-python3 -m venv .venv
-. .venv/bin/activate
-pip install -r requirements.txt
-python3 transport.py
+. ../../tools/log.sh
+
+log python3 -m venv .venv
+log . .venv/bin/activate
+log pip install -r requirements.txt
+log python3 transport.py
+
+close_log

elastic-tube-1d/fluid-cpp/run.sh

@@ -1,10 +1,14 @@
 #!/bin/sh
 set -e -u
 
+. ../../tools/log.sh
+
 if [ ! -d build ]; then
-  mkdir build
-  cmake -S . -B build
-  cmake --build build
+  log mkdir build
+  log cmake -S . -B build
+  log cmake --build build
 fi
 
-./build/FluidSolver ../precice-config.xml
+log ./build/FluidSolver ../precice-config.xml
+
+close_log

elastic-tube-1d/fluid-python/run.sh

@@ -1,4 +1,8 @@
 #!/bin/sh
 set -e -u
 
-python3 ./FluidSolver.py ../precice-config.xml
+. ../../tools/log.sh
+
+log python3 ./FluidSolver.py ../precice-config.xml
+
+close_log

elastic-tube-1d/fluid-rust/run.sh

@@ -1,4 +1,8 @@
 #!/bin/sh
 set -e -u
 
-cargo run --release ../precice-config.xml 
+. ../../tools/log.sh
+
+log cargo run --release ../precice-config.xml 
+
+close_log

elastic-tube-1d/solid-cpp/run.sh

@@ -1,10 +1,14 @@
 #!/bin/sh
 set -e -u
 
+. ../../tools/log.sh
+
 if [ ! -d build ]; then
-  mkdir build
-  cmake -S . -B build
-  cmake --build build
+  log mkdir build
+  log cmake -S . -B build
+  log cmake --build build
 fi
 
-./build/SolidSolver ../precice-config.xml
+log ./build/SolidSolver ../precice-config.xml
+
+close_log

elastic-tube-1d/solid-python/run.sh

@@ -1,4 +1,8 @@
 #!/bin/sh
 set -e -u
 
-python3 ./SolidSolver.py ../precice-config.xml
+. ../../tools/log.sh
+
+log python3 ./SolidSolver.py ../precice-config.xml
+
+close_log

elastic-tube-1d/solid-rust/run.sh

@@ -1,4 +1,8 @@
 #!/bin/sh
 set -e -u
 
-cargo run --release ../precice-config.xml
+. ../../tools/log.sh
+
+log cargo run --release ../precice-config.xml
+
+close_log

elastic-tube-3d/fluid-openfoam/run.sh

@@ -1,8 +1,11 @@
 #!/bin/sh
 set -e -u
 
-cp -r constant/polyMesh.orig constant/polyMesh
-touch fluid-openfoam.foam
+. ../../tools/log.sh
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log cp -r constant/polyMesh.orig constant/polyMesh
+
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

elastic-tube-3d/solid-calculix/run.sh

@@ -1,6 +1,10 @@
 #!/bin/sh
 set -e -u
 
+. ../../tools/log.sh
+
 export OMP_NUM_THREADS=1
 export CCX_NPROC_EQUATION_SOLVER=1
-ccx_preCICE -i tube -precice-participant Solid
+log ccx_preCICE -i tube -precice-participant Solid
+
+close_log

flow-around-controlled-moving-cylinder/controller-fmi/run.sh

@@ -1,15 +1,19 @@
 #!/bin/sh
 set -e -u
 
+. ../../tools/log.sh
+
 if [ ! -f PIDcontroller.fmu ]; then
-  cd fmu
-  rm -rf build
-  mkdir build
-  cd build
-  cmake -DFMI_TYPE=CS -DFMI_VERSION=3 ..
-  make
-  cp ./PIDcontroller.fmu ../..
-  cd ../../
+  log cd fmu
+  log rm -rf build
+  log mkdir build
+  log cd build
+  log cmake -DFMI_TYPE=CS -DFMI_VERSION=3 ..
+  log make
+  log cp ./PIDcontroller.fmu ../..
+  log cd ../../
 fi
 
-fmiprecice ./fmi-settings.json ./precice-settings.json
+log fmiprecice ./fmi-settings.json ./precice-settings.json
+
+close_log

flow-around-controlled-moving-cylinder/fluid-openfoam/run.sh

@@ -1,14 +1,16 @@
 #!/bin/sh
 set -e -u
 
-blockMesh
-transformPoints -scale '(0.0016  0.0016 1)'
-transformPoints -translate '(0.0  0.0 -0.05)'
+. ../../tools/log.sh
 
-rm -rf 0
-cp -r 0.orig 0
+log blockMesh
+log transformPoints -scale '(0.0016  0.0016 1)'
+log transformPoints -translate '(0.0  0.0 -0.05)'
 
-touch fluid-openfoam.foam
+log rm -rf 0
+log cp -r 0.orig 0
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

flow-around-controlled-moving-cylinder/solid-python/run.sh

@@ -1,6 +1,8 @@
 #!/bin/sh
 set -e -u
 
+. ../../tools/log.sh
 
-python3 solid.py ../precice-config.xml
+log python3 solid.py ../precice-config.xml
 
+close_log

flow-over-heated-plate-nearest-projection/fluid-openfoam/run.sh

@@ -1,8 +1,11 @@
 #!/bin/sh
 set -e -u
 
-blockMesh
-touch fluid-openfoam.foam
+. ../../tools/log.sh
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log blockMesh
+
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

flow-over-heated-plate-nearest-projection/solid-openfoam/run.sh

@@ -1,8 +1,11 @@
 #!/bin/sh
 set -e -u
 
-blockMesh
-touch solid-openfoam.foam
+. ../../tools/log.sh
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log blockMesh
+
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

flow-over-heated-plate-partitioned-flow/fluid1-openfoam/run.sh

@@ -1,8 +1,11 @@
 #!/bin/sh
 set -e -u
 
-blockMesh
-touch fluid1-openfoam.foam
+. ../../tools/log.sh
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log blockMesh
+
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

flow-over-heated-plate-partitioned-flow/fluid2-openfoam/run.sh

@@ -1,8 +1,11 @@
 #!/bin/sh
 set -e -u
 
-blockMesh
-touch fluid2-openfoam.foam
+. ../../tools/log.sh
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log blockMesh
+
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

flow-over-heated-plate-partitioned-flow/solid-openfoam/run.sh

@@ -1,8 +1,11 @@
 #!/bin/sh
 set -e -u
 
-blockMesh
-touch solid-openfoam.foam
+. ../../tools/log.sh
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log blockMesh
+
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

flow-over-heated-plate-steady-state/fluid-openfoam/run.sh

@@ -1,8 +1,11 @@
 #!/bin/sh
 set -e -u
 
-blockMesh
-touch fluid-openfoam.foam
+. ../../tools/log.sh
 
-../../tools/run-openfoam.sh "$@"
-. ../../tools/openfoam-remove-empty-dirs.sh && openfoam_remove_empty_dirs
+log blockMesh
+
+log ../../tools/run-openfoam.sh "$@"
+. ../../tools/openfoam-remove-empty-dirs.sh && log openfoam_remove_empty_dirs
+
+close_log

flow-over-heated-plate-steady-state/solid-codeaster/run.sh

@@ -1,12 +1,16 @@
 #!/bin/sh
 set -e -u
 
-echo "Warning: this case requires a manual preparation step for code_aster."
-echo "You also need to set an absolute path as exchange-directory in precice-config.xml."
-echo "See the tutorial and code_aster adapter documentation pages for more:"
-echo "https://precice.org/adapter-code_aster.html"
-echo ""
+. ../../tools/log.sh
+
+log echo "Warning: this case requires a manual preparation step for code_aster."
+log echo "You also need to set an absolute path as exchange-directory in precice-config.xml."
+log echo "See the tutorial and code_aster adapter documentation pages for more:"
+log echo "https://precice.org/adapter-code_aster.html"
+log echo ""
 
 export TUTORIAL_ROOT="${PWD}"
 export PRECICE_PARTICIPANT=Solid
-as_run --run solid.export
+log as_run --run solid.export
+
+close_log