Directly use micro_manager in two-scale- tutorial

two-scale-heat-conduction/micro-dumux/run.sh

@@ -9,16 +9,16 @@ usage() { echo "Usage: cmd [-s] [-p n]" 1>&2; exit 1; }
 # Check if no input argument was provided
 if [ -z "$*" ] ; then
   echo "No input argument provided. Micro Manager is launched in serial"
-  python3 run_micro_manager.py params.input
+  micro_manager micro-manager-config.json
 fi
 
 while getopts ":sp" opt; do
   case ${opt} in
   s)
-    python3 run_micro_manager.py params.input
+    micro_manager micro-manager-config.json
     ;;
   p)
-    mpiexec -n "$2" python3 run_micro_manager.py params.input
+    mpiexec -n "$2" micro_manager micro-manager-config.json
     ;;
   *)
     usage

two-scale-heat-conduction/micro-nutils/run.sh

@@ -13,16 +13,16 @@ pip install -r requirements.txt
 # Check if no input argument was provided
 if [ -z "$*" ] ; then
   echo "No input argument provided. Micro Manager is launched in serial"
-  python3 run_micro_manager.py
+  micro_manager micro-manager-config.json
 fi
 
 while getopts ":sp" opt; do
   case ${opt} in
   s)
-    python3 run_micro_manager.py
+    micro_manager micro-manager-config.json
     ;;
   p)
-    mpiexec -n "$2" python3 run_micro_manager.py
+    mpiexec -n "$2" micro_manager micro-manager-config.json
     ;;
   *)
     usage