fix(deps bitshuffle): fix bitshuffle commit to last working version

Since kiyo-masui/bitshuffle@6899f5d importing `bitshuffle`'s `h5` module has led to segmentation faults and failure to import. Fixing the bitshuffle version until further investiogation is done.
radiocosmology · Aug 20, 2021 · 21f081b · 21f081b
1 parent 8626732
commit 21f081b
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -59,7 +59,7 @@ jobs:
       run: |
         pip install --no-binary=h5py h5py
         pip install -r requirements.txt
-        pip install mpi4py numcodecs==0.7.3 bitshuffle@git+https://github.com/kiyo-masui/bitshuffle.git psutil
+        pip install mpi4py numcodecs==0.7.3 bitshuffle@git+https://github.com/kiyo-masui/bitshuffle.git@a5d78e97ee85d05cd685c94f4d159f55747f57a8 psutil
         pip install pytest pytest-lazy-fixture
         python setup.py develop
 

diff --git a/requirements.txt b/requirements.txt
@@ -1,4 +1,4 @@
-bitshuffle @ git+https://github.com/kiyo-masui/bitshuffle.git
+bitshuffle @ git+https://github.com/kiyo-masui/bitshuffle.git@a5d78e97ee85d05cd685c94f4d159f55747f57a8
 cachetools
 click
 cython

diff --git a/setup.py b/setup.py
@@ -64,7 +64,7 @@
     extras_require={
         "mpi": ["mpi4py>=1.3"],
         "compression": [
-            "bitshuffle @ git+https://github.com/kiyo-masui/bitshuffle.git",
+            "bitshuffle @ git+https://github.com/kiyo-masui/bitshuffle.git@a5d78e97ee85d05cd685c94f4d159f55747f57a8",
             "numcodecs==0.7.3",
         ],
         "zarr": ["zarr==2.8.1"],