ci: update workflow and use bitshuffle binary wheels

radiocosmology · May 30, 2022 · 5d67429 · 5d67429
1 parent 5ffd569
commit 5d67429
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Showing 2 changed files with 10 additions and 7 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -15,17 +15,18 @@ jobs:
       - uses: actions/checkout@v2
 
       - name: Set up Python 3.9
-        uses: actions/setup-python@v1
+        uses: actions/setup-python@v2
         with:
           python-version: 3.9
 
       - name: Install apt dependencies
         run: |
+          sudo apt-get update
           sudo apt-get install -y libopenmpi-dev openmpi-bin libhdf5-serial-dev
 
       - name: Install pip dependencies
         run: |
-          pip install pylint==2.7.0 pylint-ignore flake8 pytest black mpi4py pyinstrument pytest-lazy-fixture
+          pip install pylint==2.7.0 pylint-ignore flake8 pytest black mpi4py pyinstrument psutil pytest-lazy-fixture
           pip install -r requirements.txt
           python setup.py develop
           pip install .[compression]
@@ -48,19 +49,20 @@ jobs:
 
     - name: Install apt dependencies
       run: |
+        sudo apt-get update
         sudo apt-get install -y libopenmpi-dev openmpi-bin libhdf5-serial-dev
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v1
+      uses: actions/setup-python@v2
       with:
         python-version: ${{ matrix.python-version }}
 
     - name: Install pip dependencies
       run: |
-        pip install --no-binary=h5py h5py
+        pip install h5py
         pip install -r requirements.txt
         pip install zarr==2.8.1
-        pip install mpi4py numcodecs==0.7.3 bitshuffle@git+https://github.com/kiyo-masui/bitshuffle.git psutil
+        pip install mpi4py numcodecs==0.7.3 bitshuffle
         pip install pytest pytest-lazy-fixture
         python setup.py develop
 
@@ -82,12 +84,13 @@ jobs:
     - uses: actions/checkout@v2
 
     - name: Set up Python 3.9
-      uses: actions/setup-python@v1
+      uses: actions/setup-python@v2
       with:
         python-version: 3.9
 
     - name: Install apt dependencies
       run: |
+        sudo apt-get update
         sudo apt-get install -y libhdf5-serial-dev
 
     - name: Install pip dependencies

diff --git a/setup.py b/setup.py
@@ -64,7 +64,7 @@
     extras_require={
         "mpi": ["mpi4py>=1.3"],
         "compression": [
-            "bitshuffle @ git+https://github.com/kiyo-masui/bitshuffle.git",
+            "bitshuffle",
             "numcodecs==0.7.3",
             "zarr==2.8.1",
         ],