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Adds type inference and type conversion for leaf-columns to the nested JSON parser #11574

Merged
merged 226 commits into from
Sep 20, 2022
Merged

Adds type inference and type conversion for leaf-columns to the nested JSON parser #11574

merged 226 commits into from
Sep 20, 2022

Commits on May 6, 2022

  1. Squashed with initial test set

    @elstehle
    elstehle committed May 6, 2022
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  2. style fix & additional test scenario

    @elstehle
    elstehle committed May 6, 2022
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  3. removed forceinline

    @elstehle
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  4. tagging host device function

    @elstehle
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  5. Added utility to debug print & instrumented code to use it

    @elstehle
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  6. switched to using rmm also inside algorithm

    @elstehle
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  7. header include order & SFINAE macro

    @elstehle
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  8. debug print cleanups

    @elstehle
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  9. renaming key-value store op to stack_op

    @elstehle
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  10. device_span

    @elstehle
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  11. addressing review comments & minor cleanups

    @elstehle
    elstehle committed May 6, 2022
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  12. error on unsupported unsigned_t and fixed typos

    @elstehle
    elstehle committed May 6, 2022
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  13. minor style changes addressing review comments

    @elstehle
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  14. squashed with bracket/brace test

    @elstehle
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  15. clean up & addressing review comments

    @elstehle
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  16. refactored lookup tables

    @elstehle
    elstehle committed May 6, 2022
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  17. put lookup tables into their own cudf file

    @elstehle
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  18. Change interface for FST to not need temp storage

    @elstehle
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  19. removing unused var post-cleanup

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Commits on May 9, 2022

  1. unified usage of pragma unrolls

    @elstehle
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  2. Adding hostdevice macros to in-reg array

    @elstehle
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  3. making const vars const

    @elstehle
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  4. refactor lut sanity check

    @elstehle
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  5. rebase on latest FST

    @elstehle
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Commits on May 13, 2022

  1. squash & rebase on latest tokenizer version

    @elstehle
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Commits on Jun 11, 2022

  1. start

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Commits on Jun 13, 2022

  1. Merge branch 'fea-json-col-cast' of https://github.com/vuule/cudf int… 

    …o branch-22.08
    sft-managed committed Jun 13, 2022
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Commits on Jun 17, 2022

  1. Merge branch 'branch-22.08' of https://github.com/rapidsai/cudf into … 

    …fea-json-col-cast
    @vuule
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  2. Add type inference test in CMake

    @PointKernel
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  3. Merge remote-tracking branch 'upstream/branch-22.08' into type-inference

    @PointKernel
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  4. Add type inference prototype and basic test

    @PointKernel
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  5. Code formatting

    @PointKernel
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  6. rework API

    @vuule
    vuule committed Jun 17, 2022
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  7. tune up API; set up test inputs

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    vuule committed Jun 17, 2022
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  8. comments

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    vuule committed Jun 17, 2022
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Commits on Jul 22, 2022

  1. add placeholder experimental JSON reader

    @vuule
    vuule committed Jul 22, 2022
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  2. doc fix

    @vuule
    vuule committed Jul 22, 2022
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  3. copyright year

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Commits on Jul 25, 2022

  1. Merge remote-tracking branch 'upstream/branch-22.08' into type-inference

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  2. Merge branch 'branch-22.08' of https://github.com/rapidsai/cudf into … 

    …fea-read_json-experimental
    @vuule
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  3. newline 

    Co-authored-by: Bradley Dice <bdice@bradleydice.com>
    @vuule @bdice
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  4. Merge branch 'fea-read_json-experimental' of http://github.com/vuule/… 

    …cudf into fea-read_json-experimental
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  5. use span

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Commits on Jul 26, 2022

  1. Merge branch 'branch-22.08' of https://github.com/rapidsai/cudf into … 

    …fea-read_json-experimental
    @vuule
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Commits on Jul 27, 2022

  1. options check + decompression

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Commits on Aug 8, 2022

  1. Merge branch 'branch-22.10' of https://github.com/rapidsai/cudf into … 

    …fea-json-col-cast
    @vuule
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  2. Merge branch 'fea-json-col-cast' of http://github.com/vuule/cudf into… 

    … fea-json-col-cast
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Commits on Aug 9, 2022

  1. basic string column creation

    @vuule
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Commits on Aug 10, 2022

  1. basic conversion

    @vuule
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  2. remove duplicated decode_values

    @vuule
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  3. more redundancy removed

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Commits on Aug 11, 2022

  1. fixed width null/true/false support

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  2. Merge branch 'branch-22.10' of https://github.com/rapidsai/cudf into … 

    …fea-json-col-cast
    @vuule
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  3. skip input nulls

    @vuule
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  4. pass options

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Commits on Aug 12, 2022

  1. basic string column rewrite

    @vuule
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  2. string null literal + null pass throught

    @vuule
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  3. Merge branch 'branch-22.10' of https://github.com/rapidsai/cudf into … 

    …exp-read_json-adapter
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Commits on Aug 13, 2022

  1. Merge branch 'branch-22.10' of https://github.com/rapidsai/cudf into … 

    …exp-read_json-adapter
    @vuule
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Commits on Aug 15, 2022

  1. adds support for ndjson

    @elstehle
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  2. Merge remote-tracking branch 'upstream/branch-22.10' into feature/nes… 

    …ted-json-lines
    @elstehle
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  3. addresses outstanding todo

    @elstehle
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  4. Merge branch 'branch-22.10' of https://github.com/rapidsai/cudf into … 

    …fea-json-col-cast
    @vuule
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  5. Merge branch 'branch-22.10' of https://github.com/rapidsai/cudf into … 

    …exp-read_json-adapter
    @vuule
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  6. C++ side changes + test

    @vuule
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  7. working Python + test

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Commits on Aug 16, 2022

  1. clean up

    @vuule
    vuule committed Aug 16, 2022
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  2. stop using column_names

    @vuule
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  3. adds documentation for mr parameter

    @elstehle
    elstehle committed Aug 16, 2022
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  4. minor documentation fixes

    @elstehle
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  5. fixes parameter order

    @elstehle
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  6. adds option to include quote chars for string values

    @elstehle
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  7. fix copy-paste error

    @vuule
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  8. raw string 

    Co-authored-by: Elias Stehle <3958403+elstehle@users.noreply.github.com>
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  9. Merge branch 'exp-read_json-adapter' of http://github.com/vuule/cudf … 

    …into exp-read_json-adapter
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  10. remove print in Python test

    @vuule
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  11. addressing reviews

    @vuule
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  12. Java fix

    @vuule
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  13. style

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Commits on Aug 17, 2022

  1. Merge remote-tracking branch 'upstream/pull-request/11364' into featu… 

    …re/nested-json-lines
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  2. integrates upstream interface changes

    @elstehle
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  3. Merge remote-tracking branch 'fea-json-col-cast' into feature/json-pr… 

    …imitive-type-handling
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  4. Merge remote-tracking branch 'upstream/branch-22.10' into feature/nes… 

    …ted-json-lines
    @elstehle
    elstehle committed Aug 17, 2022
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  5. enables lines option in the nested reader

    @elstehle
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  6. migrates test from details api to reader api

    @elstehle
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  7. improves code comment

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Commits on Aug 18, 2022

  1. Merge branch 'feature/nested-json-lines' into feature/json-primitive-… 

    …type-handling
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Commits on Aug 19, 2022

  1. adds inference and type conversion

    @elstehle
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  2. Merge remote-tracking branch 'upstream/branch-22.10' into type-inference

    @PointKernel
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  3. Move type inference to utilities

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  4. Resolve conflicts + relocate type inference test file

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  5. Get rid of narrow conversion + add string handling

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  6. Updates: make column string iter compatible with zip iterator

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  7. Minor updates

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  8. Add missing header

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  9. Fix the infinite loop bug with while

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Commits on Aug 20, 2022

  1. Update cpp/src/io/utilities/type_inference.cuh 

    Co-authored-by: Elias Stehle <3958403+elstehle@users.noreply.github.com>
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Commits on Aug 22, 2022

  1. patches data casting for escape handling

    @elstehle
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  2. Merge remote-tracking branch 'upstream/pull-request/11121' into featu… 

    …re/json-primitive-type-handling
    @elstehle
    elstehle committed Aug 22, 2022
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  3. resolves downstream inference conflicts

    @elstehle
    elstehle committed Aug 22, 2022
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  4. removes debug prints from casting

    @elstehle
    elstehle committed Aug 22, 2022
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  5. removes local test

    @elstehle
    elstehle committed Aug 22, 2022
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Commits on Aug 23, 2022

  1. adds new logic for inferring nested columns

    @elstehle
    elstehle committed Aug 23, 2022
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  2. fixes issue for two subsequent non-UTF-16 unicode esc sequences

    @elstehle
    elstehle committed Aug 23, 2022
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Commits on Aug 25, 2022

  1. Merge remote-tracking branch 'upstream/branch-22.10' into feature/lea… 

    …f-column-type-conversion
    @elstehle
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Commits on Aug 26, 2022

  1. Merge remote-tracking branch 'upstream/branch-22.10' into feature/lea… 

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  2. resolves merge conflicts

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  3. fixes nullable behaviour to match nested json reader

    @elstehle
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  4. migrates test to pytest

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  5. fixes pytest style

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  6. adds option to keep quotes for string values

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  7. fixes doxygen

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Commits on Aug 27, 2022

  1. parses to rows to null for failing value casting

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  2. adds test for escape sequences

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  3. adds string value handling

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Commits on Aug 29, 2022

  1. adds NVTX range annotation

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  2. moves unicode escape tests to type conversion

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Commits on Aug 30, 2022

  1. cudf default stream and escape seq tests

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  2. test case for null string versus null literal

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  3. Merge remote-tracking branch 'upstream/branch-22.10' into type-inference

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  4. Update cpp/src/io/utilities/type_inference.cuh 

    Co-authored-by: Elias Stehle <3958403+elstehle@users.noreply.github.com>
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  5. Update cpp/src/io/utilities/type_inference.cuh 

    Co-authored-by: Elias Stehle <3958403+elstehle@users.noreply.github.com>
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  6. Update cpp/src/io/utilities/type_inference.cuh 

    Co-authored-by: Elias Stehle <3958403+elstehle@users.noreply.github.com>
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  7. Minor doc updates

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  8. Merge branch 'type-inference' of github.com:PointKernel/cudf into typ… 

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  9. Update docs

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Commits on Aug 31, 2022

  1. fixes cmake order

    @elstehle
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  2. refactors string handling

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  3. fixes corner case for non-surrogate pair unicode escape

    @elstehle
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  4. removes empty src file and improves comments

    @elstehle
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Commits on Sep 1, 2022

  1. few style changes

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  2. avoids superfluous decode definitions

    @elstehle
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  3. using CUDF_ENABLE_IF macro

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  4. fixes a few remaining west consts

    @elstehle
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  5. adds test coverage for remaining esc sequences

    @elstehle
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  6. adds more comments

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  7. fixes style

    @elstehle
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  8. moves data_casting to include

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  9. Merge remote-tracking branch 'upstream/branch-22.10' into feature/gen… 

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  11. Merge branch 'feature/generic-type-casting' into feature/leaf-column-… 

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  13. more cleanups

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Commits on Sep 2, 2022

  1. switches to return struct instead of tuple

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  3. integrates upstream interface changes

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  5. minor fixes and clarifications

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Commits on Sep 5, 2022

  1. Merge remote-tracking branch 'upstream/branch-22.10' into feature/lea… 

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    @elstehle
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  2. rewrites switch statement in tokenizer stage

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Commits on Sep 6, 2022

  1. fixes column order for deeply nested JSON

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  2. Merge remote-tracking branch 'upstream/branch-22.10' into type-inference

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  3. Update cpp/src/io/utilities/type_inference.cuh 

    Co-authored-by: Elias Stehle <3958403+elstehle@users.noreply.github.com>
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  4. Update cpp/src/io/utilities/type_inference.cuh 

    Co-authored-by: Elias Stehle <3958403+elstehle@users.noreply.github.com>
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  5. Cleanups: comment, remove unused header + use const var

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  6. Merge branch 'type-inference' of github.com:PointKernel/cudf into typ… 

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  7. Code formatting

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  8. Use fixed-width integers

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  9. Add omission null count handling

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  10. Update tests

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  11. Add null test

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  12. Add more tests

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Commits on Sep 7, 2022

  1. Merge remote-tracking branch 'upstream/branch-22.10' into feature/lea… 

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  2. schema meta data for non-string leaf columns

    @elstehle
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  3. Cleanups: renaming, const parameter + namespace

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  4. Code cleanup

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  5. Cleanup: use parse_options consistently

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  6. Merge remote-tracking branch 'upstream/pull-request/11121' into featu… 

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  7. resolves upstream interface changes

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Commits on Sep 9, 2022

  1. Update cpp/tests/io/type_inference_test.cu 

    Co-authored-by: Tobias Ribizel <ribizel@kit.edu>
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  2. Revert ommited null changes

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  3. Merge branch 'type-inference' of github.com:PointKernel/cudf into typ… 

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  4. Minor cleanups

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  5. Add all null test

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  6. Renaming json inference options view struct

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  7. Minor improvement: use block reduce to minimize global atomic

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  8. Minor cleanup

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  9. Update cpp/src/io/utilities/type_inference.cuh 

    Co-authored-by: Tobias Ribizel <ribizel@kit.edu>
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  10. Code formatting

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Commits on Sep 12, 2022

  1. Merge remote-tracking branch 'upstream/pull-request/11121' into featu… 

    …re/leaf-column-type-conversion
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  3. omissions in inference as zero-length strings

    @elstehle
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  4. Treat all date-like input as string

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  5. Merge remote-tracking branch 'upstream/pull-request/11121' into featu… 

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  6. Add invalid input test

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Commits on Sep 14, 2022

  1. adds explicit check for mix of struct and list values in same col

    @elstehle
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  2. renames keep_quotes option

    @elstehle
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  3. renames helper function for parse options

    @elstehle
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  4. fixes keep_quotes in tests

    @elstehle
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  5. Reinforce string condition

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  6. Use per-thread histogram with custom sum reduction

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  7. Use string scalar instead of char array

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  8. Add default member initializer to column_type_histogram

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  9. Minor updates

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  10. removes superfluous raw from string

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  11. Merge remote-tracking branch 'upstream/branch-22.10' into feature/lea… 

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  12. fixes pytest by accounting for pyarrow misbehaving

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  13. adds pytest for more types

    @elstehle
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  14. style fixes

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  15. Merge remote-tracking branch 'upstream/branch-22.10' into type-inference

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Commits on Sep 15, 2022

  1. Merge remote-tracking branch 'upstream/pull-request/11121' into featu… 

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  2. Merge remote-tracking branch 'upstream/branch-22.10' into feature/lea… 

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    @elstehle
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  3. use sparse feature of logical stack

    @elstehle
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  4. moves from hostdevice_v to d_scalar

    @elstehle
    elstehle committed Sep 15, 2022
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  5. adds test for nested column order

    @elstehle
    elstehle committed Sep 15, 2022
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  6. fixes style

    @elstehle
    elstehle committed Sep 15, 2022
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Commits on Sep 16, 2022

  1. removes giving names to trivial values

    @elstehle
    elstehle committed Sep 16, 2022
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  2. more tests on nested column inference

    @elstehle
    elstehle committed Sep 16, 2022
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  3. removes unused var

    @elstehle
    elstehle committed Sep 16, 2022
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  4. moves json_col member function definitions to source

    @elstehle
    elstehle committed Sep 16, 2022
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  5. pass by values for simple type

    @elstehle
    elstehle committed Sep 16, 2022
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Commits on Sep 19, 2022

  1. Merge remote-tracking branch 'upstream/branch-22.10' into feature/lea… 

    …f-column-type-conversion
    @elstehle
    elstehle committed Sep 19, 2022
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  2. style fix

    @elstehle
    elstehle committed Sep 19, 2022
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  3. revert style change

    @elstehle
    elstehle committed Sep 19, 2022
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  4. removes cudf_fail in favor of cudf_expects

    @elstehle
    elstehle committed Sep 19, 2022
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  5. re-enables extra logical check

    @elstehle
    elstehle committed Sep 19, 2022
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  6. fixes comment typos

    @elstehle
    elstehle committed Sep 19, 2022
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  7. canonical way for returning empty null mask

    @elstehle
    elstehle committed Sep 19, 2022
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  8. removes debug prints from pytest

    @elstehle
    elstehle committed Sep 19, 2022
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  9. Merge branch 'branch-22.10' into feature/leaf-column-type-conversion

    @karthikeyann
    karthikeyann authored Sep 19, 2022
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