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Refactor spectral scale_obs to use existing normalization function #2319

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Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,7 @@
#include <raft/core/resource/cublas_handle.hpp>
#include <raft/core/resource/cuda_stream.hpp>
#include <raft/linalg/detail/cublas_wrappers.hpp>
#include <raft/linalg/normalize.cuh>
#include <raft/spectral/cluster_solvers.cuh>
#include <raft/spectral/detail/spectral_util.cuh>
#include <raft/spectral/eigen_solvers.cuh>
Expand Down Expand Up @@ -101,8 +102,9 @@ std::tuple<vertex_t, weight_t, vertex_t> modularity_maximization(

// notice that at this point the matrix has already been transposed, so we are scaling
// columns
scale_obs(nEigVecs, n, eigVecs);
RAFT_CHECK_CUDA(stream);
auto dataset_view = raft::make_device_matrix_view(eigVecs, nEigVecs, n);
raft::linalg::row_normalize(
handle, raft::make_const_mdspan(dataset_view), dataset_view, raft::linalg::L2Norm);

// Find partition clustering
auto pair_cluster = cluster_solver.solve(handle, n, nEigVecs, eigVecs, clusters);
Expand Down
81 changes: 1 addition & 80 deletions cpp/include/raft/spectral/detail/spectral_util.cuh
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
/*
* Copyright (c) 2020-2023, NVIDIA CORPORATION.
* Copyright (c) 2020-2024, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
Expand Down Expand Up @@ -39,85 +39,6 @@
namespace raft {
namespace spectral {

template <typename index_type_t, typename value_type_t>
RAFT_KERNEL scale_obs_kernel(index_type_t m, index_type_t n, value_type_t* obs)
{
index_type_t i, j, k, index, mm;
value_type_t alpha, v, last;
bool valid;
// ASSUMPTION: kernel is launched with either 2, 4, 8, 16 or 32 threads in x-dimension

// compute alpha
mm = (((m + blockDim.x - 1) / blockDim.x) * blockDim.x); // m in multiple of blockDim.x
alpha = 0.0;

for (j = threadIdx.y + blockIdx.y * blockDim.y; j < n; j += blockDim.y * gridDim.y) {
for (i = threadIdx.x; i < mm; i += blockDim.x) {
// check if the thread is valid
valid = i < m;

// get the value of the last thread
last = __shfl_sync(warp_full_mask(), alpha, blockDim.x - 1, blockDim.x);

// if you are valid read the value from memory, otherwise set your value to 0
alpha = (valid) ? obs[i + j * m] : 0.0;
alpha = alpha * alpha;

// do prefix sum (of size warpSize=blockDim.x =< 32)
for (k = 1; k < blockDim.x; k *= 2) {
v = __shfl_up_sync(warp_full_mask(), alpha, k, blockDim.x);
if (threadIdx.x >= k) alpha += v;
}
// shift by last
alpha += last;
}
}

// scale by alpha
alpha = __shfl_sync(warp_full_mask(), alpha, blockDim.x - 1, blockDim.x);
alpha = raft::sqrt(alpha);
for (j = threadIdx.y + blockIdx.y * blockDim.y; j < n; j += blockDim.y * gridDim.y) {
for (i = threadIdx.x; i < m; i += blockDim.x) { // blockDim.x=32
index = i + j * m;
obs[index] = obs[index] / alpha;
}
}
}

template <typename index_type_t>
index_type_t next_pow2(index_type_t n)
{
index_type_t v;
// Reference:
// http://graphics.stanford.edu/~seander/bithacks.html#RoundUpPowerOf2Float
v = n - 1;
v |= v >> 1;
v |= v >> 2;
v |= v >> 4;
v |= v >> 8;
v |= v >> 16;
return v + 1;
}

template <typename index_type_t, typename value_type_t>
cudaError_t scale_obs(index_type_t m, index_type_t n, value_type_t* obs)
{
index_type_t p2m;

// find next power of 2
p2m = next_pow2<index_type_t>(m);
// setup launch configuration
unsigned int xsize = std::max(2, std::min(p2m, 32));
dim3 nthreads{xsize, 256 / xsize, 1};

dim3 nblocks{1, (n + nthreads.y - 1) / nthreads.y, 1};

// launch scaling kernel (scale each column of obs by its norm)
scale_obs_kernel<index_type_t, value_type_t><<<nblocks, nthreads>>>(m, n, obs);

return cudaSuccess;
}

template <typename vertex_t, typename edge_t, typename weight_t>
void transform_eigen_matrix(raft::resources const& handle,
edge_t n,
Expand Down
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