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- update libsbml
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@fbergmann
fbergmann committed Sep 15, 2022
1 parent 517fb3b commit 8932a79
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion libsbml_source
Submodule libsbml_source updated 82 files
+1 −1 VERSION.txt
+9 −9 configure
+4 −1 src/bindings/matlab/OutputSBML.cpp
+1 −1 src/sbml/Model.cpp
+1 −1 src/sbml/SBase.cpp
+1 −1 src/sbml/SpeciesReference.cpp
+62 −10 src/sbml/annotation/ModelHistory.cpp
+12 −0 src/sbml/annotation/ModelHistory.h
+8 −2 src/sbml/annotation/RDFAnnotationParser.cpp
+1 −1 src/sbml/annotation/RDFAnnotationParser.h
+2 −0 src/sbml/annotation/test/TestRDFAnnotation2.cpp
+14 −14 src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp
+1 −2 src/sbml/annotation/test/TestValidation.cpp
+0 −3 src/sbml/annotation/test/test-data/annotationNested-l3v1.xml
+1 −1 src/sbml/common/libsbml-version.h
+6 −6 src/sbml/packages/fbc/extension/FbcExtension.cpp
+11 −11 src/sbml/packages/fbc/extension/FbcExtension.h
+16 −0 src/sbml/packages/fbc/extension/FbcModelPlugin.cpp
+36 −0 src/sbml/packages/fbc/extension/FbcModelPlugin.h
+1 −1 src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp
+7 −7 src/sbml/packages/fbc/sbml/FluxObjective.cpp
+6 −6 src/sbml/packages/fbc/sbml/FluxObjective.h
+1 −1 src/sbml/packages/fbc/sbml/KeyValuePair.cpp
+16 −16 src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.cpp
+6 −6 src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h
+4 −6 src/sbml/packages/spatial/extension/SpatialExtension.cpp
+11 −20 src/sbml/packages/spatial/extension/SpatialExtension.h
+1 −1 src/sbml/packages/spatial/sbml/AdvectionCoefficient.cpp
+0 −22 src/sbml/packages/spatial/sbml/BoundaryCondition.h
+354 −0 src/sbml/packages/spatial/sbml/CSGSetOperator.cpp
+243 −0 src/sbml/packages/spatial/sbml/CSGSetOperator.h
+1 −1 src/sbml/packages/spatial/sbml/DiffusionCoefficient.cpp
+8 −5 src/sbml/packages/spatial/validator/SpatialSBMLError.h
+77 −44 src/sbml/packages/spatial/validator/SpatialSBMLErrorTable.h
+1 −83 src/sbml/packages/spatial/validator/SpatialUniqueBoundaryConditionsCheck.cpp
+157 −7 src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraints.cpp
+8 −2 src/sbml/packages/spatial/validator/constraints/SpatialConsistencyConstraintsDeclared.cxx
+1 −1 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223205-fail-01-01.xml
+1 −1 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223205-fail-01-02.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223250-fail-01-01.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223250-fail-01-02.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223250-pass-00-01.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-01.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-02.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-03.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-04.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-05.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-fail-01-06.xml
+1 −1 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-pass-00-01.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223251-pass-00-02.xml
+47 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223252-fail-01-01.xml
+48 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223252-fail-01-02.xml
+45 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223252-fail-01-03.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223252-pass-00-01.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-01.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-02.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-03.xml
+51 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-04.xml
+51 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-05.xml
+51 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-fail-01-06.xml
+46 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-pass-00-01.xml
+51 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223253-pass-00-02.xml
+13 −1 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223404-fail-01-02.xml
+3 −2 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223404-pass-00-02.xml
+80 −0 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223404-pass-00-03.xml
+14 −5 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223458-fail-01-01.xml
+4 −3 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223458-pass-00-01.xml
+3 −2 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223504-pass-00-02.xml
+3 −2 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223504-pass-00-03.xml
+8 −4 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223504-pass-00-04.xml
+2 −2 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223552-fail-01-01.xml
+2 −2 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223552-pass-00-01.xml
+0 −79 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-08.xml
+0 −85 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-09.xml
+0 −85 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-10.xml
+0 −79 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-11.xml
+0 −79 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-12.xml
+0 −79 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-13.xml
+0 −85 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-16.xml
+0 −85 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-17.xml
+0 −85 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-01-18.xml
+0 −76 src/sbml/packages/spatial/validator/test/test-data/general-constraints/1223651-fail-02-19.xml

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