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feat: documentation for new instance deployment #4

Merged
merged 38 commits into from
Apr 17, 2024
Merged

feat: documentation for new instance deployment #4

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2cd7f2f
Updates for running on podman
luizirber Dec 3, 2023
95d4467
add sentry for monitoring
luizirber Dec 3, 2023
e66ec33
load sentry dsn from env
luizirber Dec 4, 2023
9af5e78
also monitor mongo in sentry
luizirber Dec 4, 2023
24216b7
fix env_file
luizirber Dec 4, 2023
53d500a
change lat_lon variable
luizirber Dec 7, 2023
aa17ef4
Use new JGI URL for server
luizirber Dec 7, 2023
62c4d52
Clarify/update stats
luizirber Dec 19, 2023
cb3d6ad
config updates
luizirber Jan 21, 2024
bea741b
add podman-compose to devshell
luizirber Jan 31, 2024
4e9234d
trigger metadata update from outside for mongodb
luizirber Feb 1, 2024
f6c25e6
add pixi
luizirber Feb 12, 2024
bebe613
add search index service to podman
luizirber Feb 12, 2024
cbc8301
add makefile to document command needed to load data into mongodb
luizirber Feb 12, 2024
920b053
expose branchwater-query to nix
luizirber Feb 12, 2024
027d5e2
add partial exp to build index from sigs downloaded from wort
luizirber Feb 12, 2024
b2b74d9
deploy docs scaffold
luizirber Feb 14, 2024
86a0ac7
update sourmash dep for location, add demo data
luizirber Feb 20, 2024
395bd36
Bump to sourmash 0.13.0
luizirber Feb 24, 2024
26346aa
update pixi to include macos x64 and arm
luizirber Mar 2, 2024
4b5e026
update index building and metadata prep
luizirber Mar 4, 2024
0c85d44
update flake lock
luizirber Mar 4, 2024
c7cc5cc
pixi updates
luizirber Mar 4, 2024
d5e0808
doc updates
luizirber Mar 4, 2024
e111989
more doc updates
luizirber Mar 5, 2024
a77756f
add cd and link to frontend
luizirber Mar 6, 2024
a5e700f
add basic prod.env
luizirber Mar 6, 2024
06adcc7
create empty assets dir for index
luizirber Mar 6, 2024
9142995
no need to create assets dir
luizirber Mar 6, 2024
8df2473
Default to pixi for development
luizirber Mar 10, 2024
7ff1bf7
can't use scratch, doesn't have libgcc...
luizirber Mar 10, 2024
f3cc430
update mgnify component
luizirber Mar 23, 2024
7235a5f
update component redux
luizirber Mar 23, 2024
11b1d33
updates for new mgnify component
luizirber Mar 24, 2024
e77c036
cargo fmt
luizirber Mar 24, 2024
fd1190c
Update buildmongo/README.md
luizirber Apr 17, 2024
15696db
fix heading
luizirber Apr 17, 2024
7ab0858
update mgnify component
luizirber Apr 17, 2024
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12 changes: 12 additions & 0 deletions .dockerignore
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Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
# ignore everything
**

# except
!crates/
!assets/
!flake.nix
!flake.lock
!Cargo.toml
!Cargo.lock
!pixi.toml
!pixi.lock
7 changes: 5 additions & 2 deletions .envrc
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@@ -1,3 +1,6 @@
use flake

dotenv .env

PATH=~/.pixi/bin:$PATH

watch_file pixi.lock
eval "$(pixi shell-hook)"
5 changes: 5 additions & 0 deletions .gitignore
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Expand Up @@ -5,3 +5,8 @@ buildmongo/bqKey.json
sandbox/
result
docs/_build
prod.env
mongodb/
# pixi environments
.pixi

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