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add more input formats to `sourmash taxonomy prepare` #1669

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ctb opened this issue Jul 14, 2021 · 2 comments

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ctb commented Jul 14, 2021

NCBI taxdump format
greengenes tsv format

Contributor Author

ctb commented Jul 14, 2021

for NCBI taxdump, we would need a source of accessions-to-taxid as well.

Looks like the assembly_summary file, sourmash-bio/databases#7, might be the right place to look.

Contributor Author

ctb commented Sep 23, 2023

This is probably a better approach: plugins. #2694

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