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it would be nice to be able to load taxonomies in different formats (e.g. greengenes) 'natively' within sourmash. I think a good way to do this would be to generalize the loading code under tax/ in the same way that we generalized the loading code for sketches from files/etc in https://github.com/sourmash-bio/sourmash/pull/2428/files (see save_load.py).
(discussion points moved here from #1353)
it would be nice to be able to load taxonomies in different formats (e.g. greengenes) 'natively' within sourmash. I think a good way to do this would be to generalize the loading code under
tax/
in the same way that we generalized the loading code for sketches from files/etc in https://github.com/sourmash-bio/sourmash/pull/2428/files (seesave_load.py
).There is code in #2538 for parsing greengenes.
also we could load taxonomies via URL (with fsspec).
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