Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[MRG] fix tax argument parsing #2218

Merged
merged 15 commits into from
Aug 29, 2022
Merged

[MRG] fix tax argument parsing #2218

merged 15 commits into from
Aug 29, 2022

Commits on Aug 16, 2022

  1. use argparse extend for better list arg handling

    @bluegenes
    bluegenes committed Aug 16, 2022
    Configuration menu
    Copy the full SHA
    1ec5403 View commit details
    Browse the repository at this point in the history

  2. mult tax file tests

    @bluegenes
    bluegenes committed Aug 16, 2022
    Configuration menu
    Copy the full SHA
    b960e51 View commit details
    Browse the repository at this point in the history

Commits on Aug 17, 2022

  1. testy tests

    @bluegenes
    bluegenes committed Aug 17, 2022
    Configuration menu
    Copy the full SHA
    163ed64 View commit details
    Browse the repository at this point in the history

Commits on Aug 25, 2022

  1. Merge branch 'latest' into fix-tax-cli

    @ctb
    ctb committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    ca2ab8b View commit details
    Browse the repository at this point in the history

  2. implement force in loading

    @ctb
    ctb committed Aug 25, 2022
    Configuration menu
    Copy the full SHA
    7a655cd View commit details
    Browse the repository at this point in the history

Commits on Aug 26, 2022

  1. add some more tests

    @ctb
    ctb committed Aug 26, 2022
    Configuration menu
    Copy the full SHA
    1bf7f03 View commit details
    Browse the repository at this point in the history

  2. add test for 'extend' in metagenome -g arg

    @ctb
    ctb committed Aug 26, 2022
    Configuration menu
    Copy the full SHA
    3ead1ee View commit details
    Browse the repository at this point in the history

Commits on Aug 27, 2022

  1. Merge branch 'latest' into fix-tax-cli

    @bluegenes
    bluegenes committed Aug 27, 2022
    Configuration menu
    Copy the full SHA
    8474d29 View commit details
    Browse the repository at this point in the history

  2. mark places to test

    @ctb
    ctb committed Aug 27, 2022
    Configuration menu
    Copy the full SHA
    427f99d View commit details
    Browse the repository at this point in the history

  3. Merge branch 'fix-tax-cli' of https://github.com/sourmash-bio/sourmash … 

    …into fix-tax-cli
    @ctb
    ctb committed Aug 27, 2022
    Configuration menu
    Copy the full SHA
    dc485c8 View commit details
    Browse the repository at this point in the history

Commits on Aug 29, 2022

  1. Merge branch 'latest' of https://github.com/sourmash-bio/sourmash int… 

    …o fix-tax-cli
    @ctb
    ctb committed Aug 29, 2022
    Configuration menu
    Copy the full SHA
    199c589 View commit details
    Browse the repository at this point in the history

  2. add tests for argparse extend to tax annotate

    @ctb
    ctb committed Aug 29, 2022
    Configuration menu
    Copy the full SHA
    26d0c20 View commit details
    Browse the repository at this point in the history

  3. add test for tax prepare

    @ctb
    ctb committed Aug 29, 2022
    Configuration menu
    Copy the full SHA
    95bb2c2 View commit details
    Browse the repository at this point in the history

  4. add tests for tax grep

    @ctb
    ctb committed Aug 29, 2022
    Configuration menu
    Copy the full SHA
    116ed76 View commit details
    Browse the repository at this point in the history

  5. add tests for tax genome

    @ctb
    ctb committed Aug 29, 2022
    Configuration menu
    Copy the full SHA
    92226e7 View commit details
    Browse the repository at this point in the history