build(deps): bump DeterminateSystems/nix-installer-action from 12 to 13 #191
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test Models | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| pull_request: | |
| branches: | |
| - master | |
| - main | |
| jobs: | |
| test-turing: | |
| name: Test Turing Models | |
| runs-on: ubuntu-latest | |
| env: | |
| JULIA_NUM_THREADS: "auto" | |
| strategy: | |
| matrix: | |
| jl-file: [ | |
| "01-predictive_checks.jl", | |
| "02-linear_regression-kidiq.jl", | |
| "03-logistic_regression-wells.jl", | |
| "04-ordinal_regression-esoph.jl", | |
| "05-poisson_regression-roaches.jl", | |
| "06-robust_linear_regression-duncan.jl", | |
| #"07-robust_beta_binomial_regression-wells.jl", # FIXME: broken | |
| #"08-robust_robit_regression-wells.jl", # FIXME: broken | |
| "09-robust_negative_binomial_regression-roaches.jl", | |
| "10-robust_zero_inflated_regression-negative_binomial-roaches.jl", | |
| "10-robust_zero_inflated_regression-poisson-roaches.jl", | |
| "11-sparse_horseshoe.jl", | |
| "12-sparse_horseshoe_p.jl", | |
| "13-sparse_finnish_horseshoe.jl", | |
| "14-sparse_r2d2.jl", | |
| "15-hierarchical_varying_intercept-cheese.jl", | |
| "15-hierarchical_varying_intercept-non_centered-cheese.jl", | |
| "16-hierarchical_varying_intercept_slope-cheese.jl", | |
| #"17-model_comparison-roaches.jl", # FIXME: broken upstream in ParetoSmooth.jl | |
| ] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install Nix | |
| uses: DeterminateSystems/nix-installer-action@v13 | |
| - name: Cache Nix artifacts | |
| uses: DeterminateSystems/magic-nix-cache-action@v7 | |
| - name: Test ${{ matrix.jl-file }} | |
| run: | | |
| nix develop -L . --command bash -c "julia -e 'using Pkg; Pkg.instantiate()'" | |
| nix develop -L . --command bash -c "julia turing/${{ matrix.jl-file }}" | |
| test-stan: | |
| name: Test Stan Models | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| stan: | |
| [ | |
| { | |
| model: "01-predictive_checks-posterior", | |
| data: "coin_flip.data.json", | |
| }, | |
| { | |
| model: "01-predictive_checks-prior", | |
| data: "coin_flip.data.json", | |
| }, | |
| { model: "02-linear_regression-QR", data: "kidiq.data.json" }, | |
| { | |
| model: "02-linear_regression-optimized", | |
| data: "kidiq.data.json", | |
| }, | |
| { model: "02-linear_regression", data: "kidiq.data.json" }, | |
| { | |
| model: "03-logistic_regression-optimized", | |
| data: "wells.data.json", | |
| }, | |
| { model: "03-logistic_regression", data: "wells.data.json" }, | |
| { | |
| model: "04-ordinal_regression-optimized", | |
| data: "esoph.data.json", | |
| }, | |
| { model: "04-ordinal_regression", data: "esoph.data.json" }, | |
| { | |
| model: "05-poisson_regression-optimized", | |
| data: "roaches.data.json", | |
| }, | |
| { model: "05-poisson_regression", data: "roaches.data.json" }, | |
| { model: "06-robust_linear_regression", data: "kidiq.data.json" }, | |
| { | |
| model: "07-robust_beta_binomial_regression", | |
| data: "wells.data.json", | |
| }, | |
| { model: "08-robust_robit_regression", data: "wells.data.json" }, | |
| { | |
| model: "09-robust_negative_binomial_regression-optimized", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "09-robust_negative_binomial_regression", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "10-robust_zero_inflated_regression-negative_binomial-optimized", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "10-robust_zero_inflated_regression-negative_binomial", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "10-robust_zero_inflated_regression-poisson-optimized", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "10-robust_zero_inflated_regression-poisson", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "11-sparse_horseshoe_regression", | |
| data: "sparse_regression.data.json", | |
| }, | |
| { | |
| model: "12-sparse_horseshoe_p_regression", | |
| data: "sparse_regression.data.json", | |
| }, | |
| { | |
| model: "13-sparse_finnish_horseshoe_regression", | |
| data: "sparse_regression.data.json", | |
| }, | |
| { | |
| model: "14-sparse_r2d2_regression", | |
| data: "sparse_regression.data.json", | |
| }, | |
| { | |
| model: "15-hierarchical_varying_intercept-non_centered", | |
| data: "cheese.data.json", | |
| }, | |
| { | |
| model: "15-hierarchical_varying_intercept", | |
| data: "cheese.data.json", | |
| }, | |
| { | |
| model: "16-hierarchical_varying_intercept_slope", | |
| data: "cheese.data.json", | |
| }, | |
| { | |
| model: "17-model_comparison-negative_binomial", | |
| data: "roaches.data.json", | |
| }, | |
| { model: "17-model_comparison-poisson", data: "roaches.data.json" }, | |
| { | |
| model: "17-model_comparison-zero_inflated-negative_binomial", | |
| data: "roaches.data.json", | |
| }, | |
| { | |
| model: "17-model_comparison-zero_inflated-poisson", | |
| data: "roaches.data.json", | |
| }, | |
| ] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install Nix | |
| uses: DeterminateSystems/nix-installer-action@v13 | |
| - name: Cache Nix artifacts | |
| uses: DeterminateSystems/magic-nix-cache-action@v7 | |
| - name: Test ${{ matrix.stan.model }} | |
| run: | | |
| echo "Compiling: ${{ matrix.stan.model }}" | |
| nix develop -L . --command bash -c "stan stan/${{ matrix.stan.model }}" | |
| nix develop -L . --command bash -c "stan/${{ matrix.stan.model }} sample num_chains=4 data file=stan/${{ matrix.stan.data }}" | |
| nix develop -L . --command bash -c "stansummary output_*.csv" |