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NCBI Pubmed Toolkits

Requirements

  • Python3.6+

Installation

python3 -m pip install -U pypubmed

Usage

search

search Pubmed with term

pypubmed search --help

# do not translate
pypubmed search -l 5 ngs

# translate with a local proxies
pypubmed -p http://127.0.0.1:1081 search ngs -l 5

advance-search

advance search builder

pypubmed advance-search --help

citations

generate citations for given PMID

pypubmed citations --help

Todos

  • HTML output
  • PDF downloader
  • GUI application
  • Local paper manager

Documents

https://pypubmed.readthedocs.io/en/latest/

Star History

Star History Chart